RetrogeneDB ID: | retro_mdom_1568 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:7190074..7190462(+) | ||
Located in intron of: | ENSMODG00000013559 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000008452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.44 % |
Parental protein coverage: | 92.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVGRSGAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLK-DAEAVQKF |
MVG.SG.IA..VCGALF.GYCIYFD.K.RSDPNFKNR.R.RR....L.K...G......LK.DAEAVQKF | |
Retrocopy | MVGWSGTIATSVCGALFSGYCIYFDHKIRSDPNFKNRHRKRRNR-SLLKRDLGFPSYLTLK<DAEAVQKF |
Parental | FLEEIQLGEE-LLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQ |
FLEEIQLGEE..L.QGEYEKGVDHLTNAIA.CGQP.QLLQVLQQTLPPPVFQMLLTKLP.ISQ | |
Retrocopy | FLEEIQLGEE<ILTQGEYEKGVDHLTNAIAICGQP*QLLQVLQQTLPPPVFQMLLTKLPKISQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |