RetrogeneDB ID: | retro_eeur_545 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_342150:78582..78950(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTF1 | ||
Ensembl ID: | ENSEEUG00000008320 | ||
Aliases: | None | ||
Description: | osteoclast stimulating factor 1 [Source:HGNC Symbol;Acc:8510] |
Percent Identity: | 75. % |
Parental protein coverage: | 61.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | QVKVFRALYTFEPRTXXXXXXXXXXXXXXXXXSDTNWWKGTSKGRT-GLIPSNY-VAEQAESIDNPLHEA |
QVKVFRALYTFEPRT.................SDTN.WKGTSKGRT.G..P.....AEQAESIDNPLHEA | |
Retrocopy | QVKVFRALYTFEPRTRDELYFEEGDIIYITDMSDTNSWKGTSKGRT<GINPKQL<MAEQAESIDNPLHEA |
Parental | AKRGNLSWLRECLDNRVGVNGLDKAGSTALYW-ACHG-GHKDIVEMLFTQPNIELNQQ |
AKRGNLSWLRECLDN.VGVNGLDKA.STALYW..CHG.GHKDI.EMLFTQPNIELNQQ | |
Retrocopy | AKRGNLSWLRECLDNWVGVNGLDKAESTALYW<GCHG<GHKDIMEMLFTQPNIELNQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .93 RPM | 16 .11 RPM |
SRP017611_kidney | 5 .25 RPM | 27 .01 RPM |
SRP017611_liver | 2 .09 RPM | 12 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012808 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007226 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000002933 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008320 | 2 retrocopies |
retro_eeur_545 , retro_eeur_683,
|
Felis catus | ENSFCAG00000022374 | 1 retrocopy | |
Homo sapiens | ENSG00000134996 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011920 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010401 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001854 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002603 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019300 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021031 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012156 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000005273 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003081 | 1 retrocopy |