RetrogeneDB ID: | retro_eeur_594 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_356469:2355..2604(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15orf48 | ||
Ensembl ID: | ENSEEUG00000003556 | ||
Aliases: | None | ||
Description: | chromosome 15 open reading frame 48 [Source:HGNC Symbol;Acc:29898] |
Percent Identity: | 98.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNLFQLLMKKKELIPLVLIMTTAAGGASSFAVYSLSKSDV-IDRKNNPEPWENVDLNVPQKLITINQQWK |
MNLFQLLMKKKELIPLVLIMTTAAGGASSFAVYSLSKSDV.IDRKNNPEPWENVDLNVPQKLITINQQWK | |
Retrocopy | MNLFQLLMKKKELIPLVLIMTTAAGGASSFAVYSLSKSDVIIDRKNNPEPWENVDLNVPQKLITINQQWK |
Parental | PIEELQKVRRATK |
PIEELQKVRRATK | |
Retrocopy | PIEELQKVRRATK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .64 RPM | 0 .32 RPM |
SRP017611_kidney | 1 .69 RPM | 0 .75 RPM |
SRP017611_liver | 0 .16 RPM | 0 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031501 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020706 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003556 | 1 retrocopy |
retro_eeur_594 ,
|
Macropus eugenii | ENSMEUG00000013137 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000028279 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029216 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050251 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006433 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000021929 | 1 retrocopy |