RetrogeneDB ID: | retro_eeur_610 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_362840:10537..11453(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSEEUG00000003581 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
Percent Identity: | 85.62 % |
Parental protein coverage: | 76.35 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY |
MS.SQDS.SRDNGPD.MEPEGVIESNWNEIVDSFDDMNLSESLLR.IY.Y.FE.PSA.QQRAIL...KGY | |
Retrocopy | MSVSQDS*SRDNGPDRMEPEGVIESNWNEIVDSFDDMNLSESLLRCIYPYAFENPSATQQRAIL---KGY |
Parental | DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV |
....Q.QSGTGKTATFAISIL.QIELDLKATQALVLAPTREL.QQIQKVVMALGDYMGASCHA.IGGTNV | |
Retrocopy | GMTTQGQSGTGKTATFAISIL*QIELDLKATQALVLAPTRELVQQIQKVVMALGDYMGASCHAFIGGTNV |
Parental | RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV |
RAEVQKLQM.A.HII.GTPG.VFD...RRY.SPKYIK.FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV | |
Retrocopy | RAEVQKLQMGASHIIIGTPGHVFD--SRRYSSPKYIKTFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV |
Parental | LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI-RQFYINVEREEWKLDTLCDLYETLTITQAVIFI |
LLSATMPSDVLEVTKKF..DPI.I.VKKE.LTLEG...QFYINV..EEWKLDTLCDLYETLT.TQAVIFI | |
Retrocopy | LLSATMPSDVLEVTKKFVKDPIWIIVKKEDLTLEGT<HQFYINVKQEEWKLDTLCDLYETLTTTQAVIFI |
Parental | NTRRKVDWLTEKMHA-RDFTVSAMH-GDMDQKE |
NT.RKVDWLTEKMHA..DFTVSAM...DMDQKE | |
Retrocopy | NTLRKVDWLTEKMHA>QDFTVSAMR>RDMDQKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 204 .49 RPM |
SRP017611_kidney | 0 .19 RPM | 331 .57 RPM |
SRP017611_liver | 0 .16 RPM | 204 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000004900 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003581 | 1 retrocopy |
retro_eeur_610 ,
|
Felis catus | ENSFCAG00000024897 | 1 retrocopy | |
Homo sapiens | ENSG00000161960 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000024702 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003415 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059796 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009547 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000008694 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000030628 | 3 retrocopies | |
Sorex araneus | ENSSARG00000006017 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024814 | 1 retrocopy |