RetrogeneDB ID: | retro_fcat_370 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:19228120..19228777(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSFCAG00000024897 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
Percent Identity: | 74.43 % |
Parental protein coverage: | 53.45 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK |
RGFKDQIYDIFQKLNSNT.VVLLSATMPS..LEVTKKFMRDPI.IL.KKEELTL.GI..FY.NVE.EEWK | |
Retrocopy | RGFKDQIYDIFQKLNSNTLVVLLSATMPSNMLEVTKKFMRDPIQILLKKEELTLKGIHWFYFNVEGEEWK |
Parental | LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKER-DVIMREF-RSGSSRVLI |
LDT.CDLYETLTI.QAVI.INT.RKV..L.EKM...D.T.SAMH.DM......DVIM.E....GSSRVLI | |
Retrocopy | LDT*CDLYETLTIMQAVILINTLRKVY*LIEKMYTKDPTMSAMHRDME*GVK*DVIMKEY*STGSSRVLI |
Parental | TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEE |
TTDLLARG.DV.QVS.VI.YDLPTNRENYI.RI..GG.FG..GVA...VTE.DKR.L...ET..NTSIEE | |
Retrocopy | TTDLLARGNDVPQVSSVIKYDLPTNRENYIDRISPGGQFGHNGVATDIVTEKDKRILQYRETLHNTSIEE |
Parental | MPLNVADLI |
MPLNV..LI | |
Retrocopy | MPLNVPELI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 67 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 92 .24 RPM |
SRP017611_liver | 0 .00 RPM | 100 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000004900 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003581 | 1 retrocopy | |
Felis catus | ENSFCAG00000024897 | 1 retrocopy |
retro_fcat_370 ,
|
Homo sapiens | ENSG00000161960 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000024702 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003415 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Mus musculus | ENSMUSG00000059796 | 7 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009547 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000008694 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000030628 | 3 retrocopies | |
Sorex araneus | ENSSARG00000006017 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024814 | 1 retrocopy |