RetrogeneDB ID:

retro_ggor_920

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:13:10446404..10447622(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF4A1
Ensembl ID:ENSGGOG00000024702
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_920
ATGTCTGCAAGTCAGGATTCCTGATCCAGAGACAATGGCCCTGATAGGATGGAGCCCAAAGGTGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTTGGAGTCCCTTCTCCATGGCATCTACACCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAGGTGTTATGTTGTGATCGTTCAAGCCCAATCTGGCACT
GGGAAAATGGCCACATTTTCCACATCAATTCTGCATCAGATTGAATTAGATGTAAAAGCCACCCGGGCCTTGGTCCTAGC
ACCTACTTGAGAATCAGCTCAGCAGATACAGAAGGTGGTCATAGCACTAGGAGACCACATGGGTGCCTCCTGTCACACCT
GTATTGGGGGCACCAACGTTCGTGCTGAGGTACAGAAACTGCAGATGGAAGCTCCCCATATAATTGTGGGTACCCCTGGC
CATGTGTTTGATATGCTTAACTGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTACTGGACAAAGCTGACGAAAT
GTTAAGCCATGGATTCAAGGACCAGATCTATGACATATTCCAAGAGCTCAACAGCAACACCCAGGTAGTTTTGCCGTCAG
CTACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGAACACATTTGGATTCTGGTCCAGAAGGAAGAG
TTGACCCTGGAGGGTATCTGCCAATTCTACATCAACATGGAACGAGAAGAGTGGAAGCTGGACACACTGTGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCCTCAACACCCGCAGGAAGGTAGACTGGCTTACCAAGAAGATGCATG
CTCAAGATTTCACTGTCTCTGCCATGCATGGAGATATGGACCAGAAGGAATGAGATGGGATCATGAGGGAGTTTCATTCT
GGCTCTAGCAGAGTTTTGATTATCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGACGTGGACAGTTTGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTTGAGACATCGAGACCTTCTACAACACCCCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATC

ORF - retro_ggor_920 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.16 %
Parental protein coverage: 100. %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY
MSASQDS.SRDNGPD.MEP.GVIESNWNEIVDSFDDMNL.ESLL.GIY.YGFEKPSAIQQRAILPCI..Y
RetrocopyMSASQDS*SRDNGPDRMEPKGVIESNWNEIVDSFDDMNLLESLLHGIYTYGFEKPSAIQQRAILPCIRCY
ParentalDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV
.VI.QAQSGTGK.ATF..SIL.QIELD.KAT.ALVLAPT.E.AQQIQKVV.ALGD.MGASCH.CIGGTNV
RetrocopyVVIVQAQSGTGKMATFSTSILHQIELDVKATRALVLAPT*ESAQQIQKVVIALGDHMGASCHTCIGGTNV
ParentalRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV
RAEVQKLQMEAPHIIVGTPG.VFDMLN.RYLSPKYIKMFVLD.ADEMLS.GFKDQIYDIFQ.LNSNTQVV
RetrocopyRAEVQKLQMEAPHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKADEMLSHGFKDQIYDIFQELNSNTQVV
ParentalLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFIN
L.SATMPSDVLEVTKKFMR..I.ILV.KEELTLEGI.QFYIN.EREEWKLDTLCDLYETLTITQAVIF.N
RetrocopyLPSATMPSDVLEVTKKFMREHIWILVQKEELTLEGICQFYINMEREEWKLDTLCDLYETLTITQAVIFLN
ParentalTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP
TRRKVDWLT.KMHA.DFTVSAMHGDMDQKE.D.IMREF.SGSSRVLI.TDLLARGIDVQQVSLVINYDLP
RetrocopyTRRKVDWLTKKMHAQDFTVSAMHGDMDQKE*DGIMREFHSGSSRVLIITDLLARGIDVQQVSLVINYDLP
ParentalTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
TNRENYIHRIGR.G.FGRKGVAINMVTEEDKRTL.DIETFYNT.IEEMPLNVADLI
RetrocopyTNRENYIHRIGRRGQFGRKGVAINMVTEEDKRTL*DIETFYNTPIEEMPLNVADLI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 110 .39 RPM
SRP007412_cerebellum 0 .00 RPM 82 .26 RPM
SRP007412_heart 0 .03 RPM 47 .25 RPM
SRP007412_kidney 0 .00 RPM 206 .00 RPM
SRP007412_liver 0 .11 RPM 183 .20 RPM
SRP007412_testis 0 .10 RPM 224 .09 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_920 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_920 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Macaca mulatta retro_mmul_1280

Parental genes homology:
Parental genes homology involve 16 parental genes, and 67 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000049001 retrocopy
Erinaceus europaeus ENSEEUG000000035811 retrocopy
Felis catus ENSFCAG000000248971 retrocopy
Homo sapiens ENSG0000016196010 retrocopies
Gorilla gorilla ENSGGOG000000058672 retrocopies
Gorilla gorilla ENSGGOG00000024702 8 retrocopies
Macropus eugenii ENSMEUG000000107802 retrocopies
Myotis lucifugus ENSMLUG000000034153 retrocopies
Macaca mulatta ENSMMUG000000134991 retrocopy
Monodelphis domestica ENSMODG000000070903 retrocopies
Mus musculus ENSMUSG000000597967 retrocopies
Nomascus leucogenys ENSNLEG000000095477 retrocopies
Pan troglodytes ENSPTRG0000000869410 retrocopies
Rattus norvegicus ENSRNOG000000306283 retrocopies
Sorex araneus ENSSARG000000060177 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000248141 retrocopy



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