RetrogeneDB ID: | retro_eeur_681 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_586:563..1186(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000004422 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.59 % |
Parental protein coverage: | 65.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TFFEKARVKKACQKTLSDLKLDYLDIYLIHFPQGLQ---GEKDMFPKDANGKVLGGNTTFLEAWEGMEEL |
TFFEK..V..ACQKTL.DL.LDYLDI.L.HFPQGLQ...G.....P.D..G..L.G..TFL.A.E..EE. | |
Retrocopy | TFFEKPHVQMACQKTLQDLNLDYLDICLLHFPQGLQYITG*NEKLPRDPKGSILDGKATFLDAKETKEER |
Parental | VDEGLVKGIGISNFNHLQIERLLNKPG-LKHKPLTNQVESHPYLTQDKLIHYCRSNGIVITAYSPLGSPD |
V.E...K..GISN.N.LQI.RLLNKP..LK.KP.TNQVE.H.YLT..KL..YC.S.GI..TAYSPL.SPD | |
Retrocopy | VGEVPLKATGISNCNYLQIDRLLNKPD<LKYKPVTNQVECHLYLTKEKLAQYCHSKGISFTAYSPLESPD |
Parental | RPWAKLDDPSLMEDTKIKAIATKHKKSTAQILLRFQIQRNVAVIPKSVTPARIIENFNVFEFKLNDEYM |
RP..K.D.P.L.ED.KIKAIA.KH.KSTAQIL..FQI.RNV..IPKSVTPA.I.ENF..F.FKL.DE.M | |
Retrocopy | RP*TKPDGPCLLEDSKIKAIAAKHNKSTAQILI*FQIHRNVVMIPKSVTPAPIRENFDIFDFKLSDEKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .16 RPM | 62 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000166 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012250 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004422 | 1 retrocopy |
retro_eeur_681 ,
|
Echinops telfairi | ENSETEG00000006005 | 3 retrocopies | |
Homo sapiens | ENSG00000198074 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013098 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029762 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052131 | 1 retrocopy | |
Mus musculus | ENSMUSG00000061758 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013088 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018018 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019718 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009734 | 3 retrocopies | |
Sorex araneus | ENSSARG00000001396 | 1 retrocopy |