RetrogeneDB ID: | retro_eeur_707 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_96:5..545(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL15 | ||
Ensembl ID: | ENSEEUG00000001454 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L15 [Source:HGNC Symbol;Acc:14054] |
Percent Identity: | 75. % |
Parental protein coverage: | 59.32 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | LGFEGSQTP-YLLFPKYGFNEGHSFRRQYHPLSLHRLQYLIDLGRVDPTQPIDLTQLVNGRGVTIQPLKR |
LGFEG.QT..Y...PKYGFNEGHSF..QY.PLSLH..Q.LIDLG.VDPT.PIDLTQLVNGRGV.IQPLKR | |
Retrocopy | LGFEGGQTLFYIRIPKYGFNEGHSFGCQYQPLSLH*QQSLIDLGGVDPT*PIDLTQLVNGRGVSIQPLKR |
Parental | DYGVHLVEEGADTFKAKVNIEVQ--LASEVAIAAIEKNGGVV--TTAFYDPRSLDILCKPIPFFLRGQPI |
DYGV..VEEG............Q..LASEVAIA..EKNGGVV..TTAFYD.RS.DILCKPI.FFL.GQPI | |
Retrocopy | DYGVQMVEEGGGC*YI*AKVNIQVQLASEVAIAETEKNGGVVTITTAFYDLRSVDILCKPISFFLCGQPI |
Parental | PKRMLPPEELVPYYTDAKNRGYLADPGKYPEARLELAKKY |
PK.ML.PEEL.PYYT..KN.GYLADPGKYPEARLELAKKY | |
Retrocopy | PK*MLHPEELIPYYTHTKNSGYLADPGKYPEARLELAKKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 26 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 54 .20 RPM |
SRP017611_liver | 0 .00 RPM | 36 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001174 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006988 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005299 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016719 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017664 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001454 | 2 retrocopies |
retro_eeur_128, retro_eeur_707 ,
|
Echinops telfairi | ENSETEG00000001724 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010533 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033845 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000007286 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003768 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000921 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008566 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030578 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014106 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011844 | 2 retrocopies |