RetrogeneDB ID: | retro_rnor_2785 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:36683778..36684160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl15 | ||
Ensembl ID: | ENSRNOG00000008566 | ||
Aliases: | None | ||
Description: | 39S ribosomal protein L15, mitochondrial [Source:RefSeq peptide;Acc:NP_001100103] |
Percent Identity: | 65.38 % |
Parental protein coverage: | 61.95 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | QRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLR-RLQYLIDLGRVDPTQPIDLTQLVNGRG |
.R.....L.F.GGQTPFYI.IPKYG..EGHS.RHQYQP.SL...LQYLI.L..VDPT..IDLT.LVNGRG | |
Retrocopy | RRKNSVQLCFVGGQTPFYILIPKYGLEEGHSLRHQYQPSSLG<KLQYLIHLC*VDPTVFIDLT*LVNGRG |
Parental | VTIQPLKRDYGVQLVEEGADTFQAKVN-IEVQMASELAIAAIEKNGG-VVTTAFYDPRSL |
V.I.PLK.DY..QL.E..ADTFQAKVN...V..ASELAI..I......VV.TAFYDPR.L | |
Retrocopy | VSIKPLKKDYRIQLFEDSADTFQAKVN<LKV*LASELAITPIXXXXQ*VVITAFYDPRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .17 RPM |
SRP017611_liver | 0 .00 RPM | 22 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_3534 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001174 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006988 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005299 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016719 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017664 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001454 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001724 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010533 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033845 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000007286 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003768 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000921 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008566 | 2 retrocopies |
retro_rnor_1344, retro_rnor_2785 ,
|
Sus scrofa | ENSSSCG00000030578 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014106 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011844 | 2 retrocopies |