RetrogeneDB ID: | retro_eeur_81 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_4950:83059..83839(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPK | ||
Ensembl ID: | ENSEEUG00000005831 | ||
Aliases: | None | ||
Description: | centromere protein K [Source:HGNC Symbol;Acc:29479] |
Percent Identity: | 89.23 % |
Parental protein coverage: | 95.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | DSTTEVENNQNAEEELFKECEEMWKDMEECQNKLSLVGTETLTDSNAQLSLLIMQAKCLTAELSQWQNET |
DSTTEVENNQNAEEELFKECEEMWKDMEECQNKLSLVGTETLTDSNAQLSLLI.QAKCLTA.LSQWQNET | |
Retrocopy | DSTTEVENNQNAEEELFKECEEMWKDMEECQNKLSLVGTETLTDSNAQLSLLIIQAKCLTAGLSQWQNET |
Parental | PEXXXXXXXXXXXXXXXXFTKLKHDLELVLSTVQSKNEKLKEDLEREQQWLREQQQIMESLNALHNKMKE |
PE................FTKLKHDLELVLSTVQSKNEKLKEDLEREQQWLREQQQIMESLNALHNKMKE | |
Retrocopy | PEIIPLSEEILVSLGKEQFTKLKHDLELVLSTVQSKNEKLKEDLEREQQWLREQQQIMESLNALHNKMKE |
Parental | QIVTFSESRVISELKTKLHDIKEYRKKLLITMGEFLEDHFPLPDRNAKKKKKNKETTEHLITLHEILEIL |
QIVTFSESRVISELKTKLHDIKEYRKKLLITMGEFLEDHFPLPDRNA.........TEHLITLHEILEIL | |
Retrocopy | QIVTFSESRVISELKTKLHDIKEYRKKLLITMGEFLEDHFPLPDRNAXXXXXXXXXTEHLITLHEILEIL |
Parental | LNRLFDVPHDPYVKIRDSFWPPYIELLLRNGIALRHPEDPTRIRLEAFHQ |
LNRLFDVPHDPYVKIRDSFWPPYI.LLLRNGIALRHPEDPTRIRLEAFHQ | |
Retrocopy | LNRLFDVPHDPYVKIRDSFWPPYI*LLLRNGIALRHPEDPTRIRLEAFHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .06 RPM | 3 .71 RPM |
SRP017611_kidney | 1 .31 RPM | 3 .00 RPM |
SRP017611_liver | 0 .32 RPM | 0 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013993 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007357 | 1 retrocopy | |
Equus caballus | ENSECAG00000019165 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005831 | 1 retrocopy |
retro_eeur_81 ,
|
Monodelphis domestica | ENSMODG00000019645 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011568 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006527 | 1 retrocopy |