RetrogeneDB ID: | retro_ocun_1199 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:86394492..86394965(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011568 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.83 % |
Parental protein coverage: | 59.71 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSVNQQSLDPDSTTDVEVVTDTEEELIKECEEMWKEMEEIKCQNKLSLIGTETLTDSNAQISL-LIMQVK |
.SVNQQ.LDP.S..DVEVVT.TEE.LIKECEEM.K.ME...CQNK.SLI..ET.TDSNAQ.SL..IM..K | |
Retrocopy | LSVNQQDLDPESAIDVEVVTGTEE*LIKECEEM*KDMEG--CQNK*SLIRAETFTDSNAQLSL<IIM--K |
Parental | CLTAELSQWQKETPEIAPLNDDVLVTLGKEEFQKLQHDLEMVLSTIQSKNEKLKEDLKREQQWLDEQQQI |
CLTA.LS.W.KETPEIAPL..DVLVTLGKE.FQK.QHDLE.V.STIQ.KNEKLKED..REQQ.LD..QQI | |
Retrocopy | CLTAGLSHWHKETPEIAPLSEDVLVTLGKE-FQKPQHDLEIVPSTIQAKNEKLKEDFQREQQCLDD*QQI |
Parental | MESLNVLHSELKNQVVTFSESRIF |
MESLNVLHSELKNQVV.FS.SRIF | |
Retrocopy | MESLNVLHSELKNQVVAFSKSRIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .51 RPM |
SRP017611_liver | 0 .00 RPM | 0 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013993 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007357 | 1 retrocopy | |
Equus caballus | ENSECAG00000019165 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005831 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019645 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011568 | 2 retrocopies |
retro_ocun_1199 , retro_ocun_74,
|
Tursiops truncatus | ENSTTRG00000006527 | 1 retrocopy |