RetrogeneDB ID: | retro_ocun_74 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019037:85693..86506(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000020938 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000011568 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSVNQQSLDPDSTTDVEVVTDTEEELIKECEEMWKEMEEIKCQNKLSLIGTETLTDSNAQISLLIMQVKC |
MSVNQQSLD.DSTTDVEV.TDTEEELIKECEEMWKEMEE..CQNKL.LIGTETLTDSNAQ.SLLIMQVKC | |
Retrocopy | MSVNQQSLDSDSTTDVEVITDTEEELIKECEEMWKEMEE--CQNKLLLIGTETLTDSNAQLSLLIMQVKC |
Parental | LTAELSQWQKETPEIAPLNDDVLVTLGKEEFQKLQHDLEMVLSTIQSKNEKLKEDLKREQQWLDEQQQIM |
LTAELS..QKETPEIAPLND.VLVTLGKEEFQKLQHDLEMVLSTIQSKNEKLKEDLKREQQWL.EQQQIM | |
Retrocopy | LTAELSV-QKETPEIAPLNDGVLVTLGKEEFQKLQHDLEMVLSTIQSKNEKLKEDLKREQQWLEEQQQIM |
Parental | ESLNVLHSELKNQVVTFSESRIFTELKTKLLNVKKYKKKLLITLGEFLEDHFPLPDGSVKKKKKSIQEST |
ESLNVLHSELKNQVVTFSESRIFTELKTK.LNVKKYKKKLLITLGEFLEDHFPLPDGSVKKKKKS.QEST | |
Retrocopy | ESLNVLHSELKNQVVTFSESRIFTELKTKMLNVKKYKKKLLITLGEFLEDHFPLPDGSVKKKKKSTQEST |
Parental | AQLITLHEILETLINRLFDVPHDPYVKISDSFWPPYIELLLRNGIALRHPEDPTQIRLEAFHQ |
AQLITLHEILETLINR.FDV.HDPYVKISDSF.PPYIELLL.NGIALRHPEDPTQIRLEAF.Q | |
Retrocopy | AQLITLHEILETLINRFFDVLHDPYVKISDSFCPPYIELLLCNGIALRHPEDPTQIRLEAFLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .51 RPM |
SRP017611_liver | 0 .00 RPM | 0 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013993 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007357 | 1 retrocopy | |
Equus caballus | ENSECAG00000019165 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005831 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019645 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011568 | 2 retrocopies |
retro_ocun_1199, retro_ocun_74 ,
|
Tursiops truncatus | ENSTTRG00000006527 | 1 retrocopy |