RetrogeneDB ID:

retro_etel_1035

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_202704:4531..4740(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000018566
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000013571
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1035
ATGCCCAAGAGAAAGGCTTAAGGGGATGCTAAGGGCGATAAAGGATAAAGCCAAGGTGAAGGATGGACATCAGAGGAGAT
CAGCAAGGTTAGCTGCTAAACATATTTCTCCAAAACCAGAGCCTAAGCTTCAGAAGCCCCTCCAAGAAGGAGAGAAGGGT
GCTCAAGGGGAAACTGAGGAAAGGGGACGCTGGTCAAAGGATGGGAAAT

ORF - retro_etel_1035 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.11 %
Parental protein coverage: 75.56 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMPKRKAEGDAKGDKA-KVK--DEPQRRSARLSAKPAPAKPEPKPKKAPAKKGEK-VPKGKKGKADAGKDG
MPKRKA.GDAKGDK..K.K..D..QRRSARL.AK....KPEPK..K.P...GEK.V.KGK..K.DAG...
RetrocopyMPKRKA*GDAKGDKG>KAKVKDGHQRRSARLAAKHISPKPEPKLQK-PLQEGEK>VLKGKLRKGDAGQRM
ParentalNN
.N
RetrocopyGN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1035 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 138 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000381047 retrocopies
Canis familiaris ENSCAFG0000002316835 retrocopies
Echinops telfairi ENSETEG00000013571 33 retrocopies
Felis catus ENSFCAG000000128123 retrocopies
Macropus eugenii ENSMEUG000000109668 retrocopies
Mus musculus ENSMUSG000000030382 retrocopies
Pteropus vampyrus ENSPVAG000000172695 retrocopies
Sorex araneus ENSSARG000000131393 retrocopies
Sus scrofa ENSSSCG000000035553 retrocopies
Tupaia belangeri ENSTBEG0000001663233 retrocopies
Tursiops truncatus ENSTTRG000000056815 retrocopies
Vicugna pacos ENSVPAG000000080761 retrocopy



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