Parental gene:

HMGN2, ENSCAFG00000023168

Aliases:HMGN2, HMG-17
Description:Canis lupus familiaris non-histone chromosomal protein HMG-17 (HMGN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001003101]
Organism:Dog (Canis familiaris)
Coordinates:2:73579041..73582786(-)


>ENSCAFG00000023168
ATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAAGGAGATAAAGCCAAGGTGAAGGATGAGCCACAGAGAAGATCTGCAAG
GTTATCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCA
AAGGGAAAAAGGGGAAAGCTGATGCTGGCAAGGATGGAAATAATCCTGCAGAAAATGGAGATGCCAAAACAGACCAGGCA
CAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 22 .87 RPM
SRP017611_kidney 60 .82 RPM
SRP017611_liver 19 .14 RPM
SRP012049_cerebellum 112 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000038104 ortholog_one2one 7 retrogenes
retro_btau_1041, retro_btau_1160, retro_btau_1200, retro_btau_1292, retro_btau_1297, retro_btau_1684, retro_btau_482,
Echinops telfairi ENSETEG00000013571 ortholog_one2many 33 retrogenes
retro_etel_1035, retro_etel_1097, retro_etel_1210, retro_etel_1253, retro_etel_1282, retro_etel_1298, retro_etel_1314, retro_etel_1346, retro_etel_1398, retro_etel_1582, retro_etel_165, retro_etel_1690, retro_etel_1710, retro_etel_178, retro_etel_1836, retro_etel_1845, retro_etel_1939, retro_etel_1945, retro_etel_1951, retro_etel_1961, retro_etel_2079, retro_etel_253, retro_etel_292, retro_etel_298, retro_etel_446, retro_etel_481, retro_etel_505, retro_etel_511, retro_etel_571, retro_etel_61, retro_etel_768, retro_etel_819, retro_etel_881,
Felis catus ENSFCAG00000012812 possible_ortholog 3 retrogenes
retro_fcat_1842, retro_fcat_4, retro_fcat_530,
Macropus eugenii ENSMEUG00000010966 possible_ortholog 8 retrogenes
retro_meug_1178, retro_meug_126, retro_meug_1859, retro_meug_1910, retro_meug_1997, retro_meug_248, retro_meug_369, retro_meug_76,
Mus musculus ENSMUSG00000003038 possible_ortholog 2 retrogenes
retro_mmus_202, retro_mmus_2582,
Pteropus vampyrus ENSPVAG00000017269 ortholog_one2one 5 retrogenes
retro_pvam_1046, retro_pvam_1059, retro_pvam_1065, retro_pvam_379, retro_pvam_4,
Sorex araneus ENSSARG00000013139 ortholog_one2one 3 retrogenes
retro_sara_12, retro_sara_17, retro_sara_176,
Sus scrofa ENSSSCG00000003555 ortholog_one2one 3 retrogenes
retro_sscr_573, retro_sscr_66, retro_sscr_985,
Tupaia belangeri ENSTBEG00000016632 ortholog_one2one 33 retrogenes
retro_tbel_1351, retro_tbel_16, retro_tbel_1844, retro_tbel_21, retro_tbel_2219, retro_tbel_2498, retro_tbel_2670, retro_tbel_3050, retro_tbel_309, retro_tbel_3101, retro_tbel_3112, retro_tbel_3121, retro_tbel_3149, retro_tbel_320, retro_tbel_3413, retro_tbel_3462, retro_tbel_36, retro_tbel_389, retro_tbel_4058, retro_tbel_417, retro_tbel_4469, retro_tbel_448, retro_tbel_4615, retro_tbel_4644, retro_tbel_475, retro_tbel_50, retro_tbel_538, retro_tbel_62, retro_tbel_65, retro_tbel_66, retro_tbel_704, retro_tbel_732, retro_tbel_757,
Tursiops truncatus ENSTTRG00000005681 possible_ortholog 5 retrogenes
retro_ttru_1392, retro_ttru_1443, retro_ttru_3, retro_ttru_345, retro_ttru_788,
Vicugna pacos ENSVPAG00000008076 ortholog_one2one 1 retrogene
retro_vpac_183,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_38 80.00 100.00
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2. retro_cfam_266 81.93 90.00
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3. retro_cfam_317 92.31 100.00
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4. retro_cfam_324 96.67 100.00
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5. retro_cfam_351 97.78 100.00
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6. retro_cfam_353 87.78 100.00
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7. retro_cfam_381 91.67 80.00
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8. retro_cfam_410 84.27 98.89
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9. retro_cfam_446 95.56 100.00
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10. retro_cfam_538 94.51 100.00
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11. retro_cfam_623 89.74 85.56
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12. retro_cfam_628 95.60 100.00
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13. retro_cfam_705 71.91 96.67
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14. retro_cfam_745 90.11 100.00
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15. retro_cfam_783 93.33 98.89
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16. retro_cfam_795 93.26 98.89
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17. retro_cfam_821 92.22 98.89
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18. retro_cfam_845 89.01 100.00
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19. retro_cfam_860 88.89 100.00
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20. retro_cfam_1043 98.88 98.89
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21. retro_cfam_1188 90.11 100.00
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22. retro_cfam_1314 55.41 81.11
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23. retro_cfam_1360 97.78 100.00
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24. retro_cfam_1519 73.85 72.22
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25. retro_cfam_1546 79.12 100.00
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26. retro_cfam_1593 98.89 100.00
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27. retro_cfam_1606 98.89 100.00
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28. retro_cfam_1629 93.02 94.44
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29. retro_cfam_1681 94.44 100.00
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30. retro_cfam_1708 92.22 100.00
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31. retro_cfam_1784 96.67 100.00
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32. retro_cfam_1989 97.78 100.00
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33. retro_cfam_2060 77.78 98.89
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34. retro_cfam_2097 88.64 97.78
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35. retro_cfam_2133 94.44 100.00
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Download FASTA sequences of all ENSCAFG00000023168 retrocopies