RetrogeneDB ID: | retro_etel_1238 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_233754:10255..10740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP4R2 | ||
Ensembl ID: | ENSETEG00000019946 | ||
Aliases: | None | ||
Description: | protein phosphatase 4, regulatory subunit 2 [Source:HGNC Symbol;Acc:18296] |
Percent Identity: | 65.03 % |
Parental protein coverage: | 58.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NNSLNRMNGVMFPGNSPSYTERSNINGPGTPRPLNRPKVSLSVPMTTNGLPENTDSKEANVQQSEDKHHS |
.N.L..M.G..FPG.S.SYTERSNINGPG.PRPLN.PKVSLS.PMT.NGL..NTDSKEAN.QQ...K..S | |
Retrocopy | SNILI*MSGLRFPGSSTSYTERSNINGPGMPRPLN*PKVSLSAPMTSNGLLNNTDSKEANLQQKGVKKYS |
Parental | EALSSESEGTAVSPMKNKHPGEDAVEAEGHEVKRLRFDKESEVRETASQTPSSAASPVVVEEKEAAA-SS |
E....ESEG..VSPMKN.HP.E..VEAEGHEVKRL.FD.E.EVRE..SQT.SS.AS...VEE.E....SS | |
Retrocopy | ETPKYESEGGSVSPMKNNHPDEEVVEAEGHEVKRLSFDNEREVRESTSQTTSSEASLALVEEIEVSS<SS |
Parental | PDKDEESSSAEQHCTEEEEEEEE |
..KD.E.S....HCTEEEE...E | |
Retrocopy | LNKDKEGSCTRKHCTEEEEDNDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007954 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000019946 | 2 retrocopies |
retro_etel_1238 , retro_etel_148,
|
Homo sapiens | ENSG00000163605 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000000513 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016959 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052144 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006235 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015108 | 5 retrocopies |