RetrogeneDB ID: | retro_mmus_3474 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:75233412..75234309(+) | ||
Located in intron of: | ENSMUSG00000031196 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083736 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppp4r2 | ||
Ensembl ID: | ENSMUSG00000052144 | ||
Aliases: | Ppp4r2, BE691708, C230060M08Rik | ||
Description: | protein phosphatase 4, regulatory subunit 2 [Source:MGI Symbol;Acc:MGI:3027896] |
Percent Identity: | 92.98 % |
Parental protein coverage: | 71.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DKFLRGVEKNVMVVSCVCPSSEKNNSNSLNRMNGVMFPGNSPNYTDRSNINGPGTPRPLNRPKLSLSAPL |
DKFLRGVEKNVMVVSCVCPSSEKNNSNSLNRMNGVMFPGNSPNYTDRSNINGPGTPRPLNRPKLSLSAPL | |
Retrocopy | DKFLRGVEKNVMVVSCVCPSSEKNNSNSLNRMNGVMFPGNSPNYTDRSNINGPGTPRPLNRPKLSLSAPL |
Parental | TTNGLPESTDSKDSELQLSEEKGHSDSSASESEVSLLSPVKNKHPDEDAVESEEHEVKRLKFDKEGDVRE |
TTNGLPESTDSKDSELQLSEEKGHSDSSASESEVSLLSPVKNKHPDEDAVESEEHEVKRLKFDKEGDVRE | |
Retrocopy | TTNGLPESTDSKDSELQLSEEKGHSDSSASESEVSLLSPVKNKHPDEDAVESEEHEVKRLKFDKEGDVRE |
Parental | TASQTVSGEVSSVRAEETETAAPPPDKDRESRTRQHCTEEEEEEEEEEEEEEEESFMTPREMVPERKNQE |
TASQTVSGEVSSVRAEETETA.PPPDKDRESRTRQHC.................SFMTPREMVPERKNQE | |
Retrocopy | TASQTVSGEVSSVRAEETETAIPPPDKDRESRTRQHCXXXXXXXXXXXXXXXXXSFMTPREMVPERKNQE |
Parental | KESDDALTVNEETSEESHQMEGSGVSPAQTDSTSERSDSAGASRSGSDCLETQESGGPPSSKTGESVSVP |
KESDD.LTVNEETSEESHQMEGSGVSPAQTDSTSERSDSAGASRSGSDCLETQESGGPPSSKTGESVSVP | |
Retrocopy | KESDDTLTVNEETSEESHQMEGSGVSPAQTDSTSERSDSAGASRSGSDCLETQESGGPPSSKTGESVSVP |
Parental | SSMESEEAAEVTDDPMEQD |
SSME.EEA.EVTDDPMEQD | |
Retrocopy | SSMENEEATEVTDDPMEQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 27 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .80 RPM |
SRP007412_heart | 0 .00 RPM | 14 .16 RPM |
SRP007412_kidney | 0 .02 RPM | 21 .77 RPM |
SRP007412_liver | 0 .00 RPM | 15 .76 RPM |
SRP007412_testis | 0 .00 RPM | 30 .00 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001YIJ | POLR2A | X:75232984..75233488 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_158012 | 553 libraries | 434 libraries | 83 libraries | 2 libraries | 0 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007954 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000019946 | 2 retrocopies | |
Homo sapiens | ENSG00000163605 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000000513 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016959 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052144 | 3 retrocopies |
retro_mmus_1068, retro_mmus_1157, retro_mmus_3474 ,
|
Oryctolagus cuniculus | ENSOCUG00000006235 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015108 | 5 retrocopies |