RetrogeneDB ID: | retro_etel_1728 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_290274:1540..2062(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA5 | ||
Ensembl ID: | ENSETEG00000002187 | ||
Aliases: | None | ||
Description: | annexin A5 [Source:HGNC Symbol;Acc:543] |
Percent Identity: | 75. % |
Parental protein coverage: | 55.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | TSGYYQRMLVVLLQTNRDPDTGVDEAQVEHDAQVLFRAGELKWGTDEEKF-ITIFGTRSVSHLRRVFDKY |
TSG.YQRMLVVLL..NRDPDTG.DEAQV..DAQVLF...ELKWG.DEEK..ITIFGT.SVSHLRRV.D.. | |
Retrocopy | TSGCYQRMLVVLLWANRDPDTGLDEAQVKQDAQVLFQGVELKWGRDEEKL<ITIFGT*SVSHLRRVLD-- |
Parental | MTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPGYLAETLYRALKGAG-TDDHTLIRVVV-SRSEIDL |
M.ISGFQ.EETID.ETSGN.EQLLLA.VK.I.S.P..LA.TL..A..GAG..DD.TL..V.V.SRSEI.L | |
Retrocopy | MAISGFQMEETIDWETSGNWEQLLLAAVKAIQSTPAHLADTLNHAMQGAG<ADDRTLSTVWV<SRSEIHL |
Parental | FNIRKEFRKNFASSLYSMIKGDTSGDYKKALLMLCGGEDD |
FN.R.EFRKNFA.SLYSMI.GD.SGDYKKALLMLC.GEDD | |
Retrocopy | FNVRMEFRKNFATSLYSMIQGDISGDYKKALLMLCVGEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021746 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002187 | 3 retrocopies |
retro_etel_1728 , retro_etel_370, retro_etel_901,
|
Echinops telfairi | ENSETEG00000018299 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003853 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003878 | 1 retrocopy |