RetrogeneDB ID: retro_meug_1071

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold27657:199..755(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA5
• Ensembl ID: ENSMEUG00000003853
• Aliases: None
• Description: annexin A5 [Source:HGNC Symbol;Acc:543]

Sequence

>retro_meug_1071
CTGCAGGATGATGTCATTGGGGATACTTCTGGATACTATGAGAGATTGCTGGTGGTTCTTCTGCAGGATAACAGAGATTC
TGATGATGGACTAAGTGAAGATCTGGTGGAACAAGTTGCTAAGGACCTGTTCTAAGGTAGCGAATTGAAACGGGGGCAGA
TGAAGAAAAGTTCATCACCATTTTGGGAACAGGAAACGTGTCTCACTTAAGAAGGGTGTTTGATAAATACATTCCCATAT
AAGGATTTCAGTTTAAAGAAACCATTGACCAGGGATAAGTCAGGTCACCTGGAACAGCTGCTCCTTGCTATTGTAAAGTC
TATCTGAAGTGCCCCAGTTTCCTGGCTGAGATGCTCTACTATGCCATGATGGGTGCTGGCACTGATGGCCATGCTCTCAT
AAGAGTCCAGGAGTTTCCAGGAGTGAAAAATACCTATTCAACATCAGAAAAGAATTTAGAAAGAACTTTCCAACTTCTCT
TTATTCCATGATTAAGGGTGACACATCTGGAGATTACAAGAGAGTGCTGTTACTTATTTGTGGTGGAGAAGATGAC

Alignment

ORF - retro_meug_1071 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.0 %
• Parental protein coverage: 97.88 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LEDDVIGDTSGYYQRMLVVLLQAKRDSDDGLNEGLVEQDAKDLFQAGELK-WGTDEEKFITILGTRNVSH
          L.DDVIGDTSGYY.R.LVVLLQ..RDSDDGL.E.LVEQ.AKDLF...ELK..G.DEEKFITILGT.NVSH
Retrocopy LQDDVIGDTSGYYERLLVVLLQDNRDSDDGLSEDLVEQVAKDLF*GSELK<TGADEEKFITILGTGNVSH

Parental  LRRVFDKYMTISGFQIEETID-RETSGHLEQLLLAIVKSVRSV-PAYLAETLYYAMKGAGTDDHTVIRVI
          LRRVFDKY..I.GFQ..ETID.R..SGHLEQLLLAIVKS..S..P..LAE.LYYAM.GAGTD.H..IRV.
Retrocopy LRRVFDKYIPI*GFQFKETID>RDKSGHLEQLLLAIVKSI*SA<PSFLAEMLYYAMMGAGTDGHALIRVQ

Parental  VSRSEKDLFNI-RKEFRKNF-ATSLYSMIKDDTSGDYKRALLLLCGGEDD
          .....K.......K.....F..TSLYSMIK.DTSGDYKR.LLL.CGGEDD
Retrocopy EFPGVKNTYSTSEKNLERTF<PTSLYSMIKGDTSGDYKRVLLLICGGEDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1071 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1071 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021746	1 retrocopy	retro_btau_308,
Echinops telfairi	ENSETEG00000002187	3 retrocopies	retro_etel_1728, retro_etel_370, retro_etel_901,
Macropus eugenii	ENSMEUG00000003853	3 retrocopies	retro_meug_1071 , retro_meug_1782, retro_meug_985,
Macropus eugenii	ENSMEUG00000008980	3 retrocopies	retro_meug_1000, retro_meug_312, retro_meug_389,
Otolemur garnettii	ENSOGAG00000003878	1 retrocopy	retro_ogar_2257,