RetrogeneDB ID: | retro_etel_1993 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_322363:41869..42690(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006918 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA4A | ||
Ensembl ID: | ENSETEG00000010296 | ||
Aliases: | None | ||
Description: | tubulin, alpha 4a [Source:HGNC Symbol;Acc:12407] |
Percent Identity: | 70.61 % |
Parental protein coverage: | 61.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | VHVGQAGVQMGNACW-ELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVI |
......GVQ.GNAC...LYCL.HGIQPDGQMPSDKT.GG.DDSFTTFFCETG.GK.V.RAVFVDL.PTVI | |
Retrocopy | MNLSPRGVQRGNACG<QLYCLDHGIQPDGQMPSDKTVGGRDDSFTTFFCETGVGKPVSRAVFVDLAPTVI |
Parental | DEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQ-GFLVFHSFGGG |
DE.R.GPY.QLFHPEQL.TGKEDAANN.A.GH...G.EI..PVLDR.RKL.DQ.TGLQ.G.LV.HSFG.G | |
Retrocopy | DETRKGPYHQLFHPEQLVTGKEDAANNDA*GHSAFGQEILNPVLDRLRKLLDQRTGLQ<GCLVRHSFGSG |
Parental | TGSGFTSLLMERLSVDYGKKSKLEFSIYPA-PQVSTAVVEPYNSILTNHTTLEHSDCAFMVDNEAIYDIG |
.GSGFT..LMER.S.DYGKKS.LE..I.PA.P....A.VEPYN.ILT.HTTLE.SD.AFM.DNEAI.D.. | |
Retrocopy | QGSGFT*PLMERPSADYGKKSTLELPISPA<PLAFAAMVEPYNPILTTHTTLEPSDYAFMGDNEAISDSC |
Parental | RSNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH-FPLATYAPVISAEKA |
R.NL..ERPT.T.L.RL...I.SSI.ASLRF..AL.VDLT.FQ.NL.P.PRIH..P.ATYA..ISAEKA | |
Retrocopy | RCNLNLERPTDTSLKRLLGPILSSIAASLRFNRALHVDLTKFQINLAPSPRIH<LPRATYAHLISAEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000154 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010296 | 2 retrocopies |
retro_etel_1816, retro_etel_1993 ,
|
Felis catus | ENSFCAG00000027277 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000804 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010798 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003597 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019497 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010042 | 1 retrocopy |