RetrogeneDB ID: | retro_etel_2090 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_53173:506..927(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000003538 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF10 | ||
Ensembl ID: | ENSETEG00000008886 | ||
Aliases: | None | ||
Description: | TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa [Source:HGNC Symbol;Acc:11543] |
Percent Identity: | 67.59 % |
Parental protein coverage: | 64.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RVPAPVTAGGAAPPEGVMSNGVYVLPSAANGEVKPVVSSTPLVDFLM--QLEDYTPT-IPDAVTGYYLNR |
RVP....AG.AAP.EG..SNG...LPSAA.GE..PV..STPL..F.....L.DY.P..IPDAVTGY.LN. | |
Retrocopy | RVPGSRLAG-AAPAEGAKSNGSSWLPSAASGEGTPVMASTPLWTFCCSWRLHDYDPR<IPDAVTGYCLNP |
Parental | AGFEASDPRIIRLISLAAQKFISDIANDALQHCK-MKGTASGSSRSKSKDRKYTLTMEDLTPALSEYGIN |
AG..ASDPRIIRLISLAAQKFISD.AN.ALQH.K.MKG.ASGSSRSKSKDRK..LTME..T...SE.GI. | |
Retrocopy | AGSAASDPRIIRLISLAAQKFISDTANGALQHRK<MKGAASGSSRSKSKDRKDALTMEEVT-LPSECGIS |
Parental | VKKPH |
VKK.. | |
Retrocopy | VKKTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016278 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006498 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000814 | 1 retrocopy | |
Equus caballus | ENSECAG00000007794 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008412 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000008886 | 1 retrocopy |
retro_etel_2090 ,
|
Felis catus | ENSFCAG00000015390 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000029330 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008216 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000024459 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007743 | 1 retrocopy | |
Mus musculus | ENSMUSG00000043866 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004894 | 1 retrocopy |