RetrogeneDB ID: | retro_etel_267 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_4523:10134..10619(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1L1 | ||
Ensembl ID: | ENSETEG00000014736 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 1-like 1 [Source:HGNC Symbol;Acc:9463] |
Percent Identity: | 69.64 % |
Parental protein coverage: | 51.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | NLYAEPAVLKWI-RENISEWRNCTIVS-PDAGGAKR-VTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
.LYA..AVLKWI.RE..SEWRN.TI...PDA.GA.....SIAD.L.VD..LIHKE.K..NEV..MVL.GD | |
Retrocopy | DLYAKAAVLKWI<RESTSEWRNYTIIP<PDAVGARQ<AASIADWLHVDLVLIHKEQK-TNEVVCMVLIGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAG-ATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQED |
V..RVAI.VDDMA.TC..ICHAAD.LLSA..A.RVYAI.THGIFS.PA...INNACFEA.V.TNTIPQED | |
Retrocopy | VTYRVAIFVDDMAGTCSSICHAADILLSAE<AARVYAIVTHGIFSSPAVFCINNACFEAIVGTNTIPQED |
Parental | KMKHCSKIQVIDISMILAEAIRRTHNGE |
K.K..SK.QVIDISM.LAEA..RTHN.E | |
Retrocopy | KRKQSSKTQVIDISMSLAEASKRTHNEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000002028 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000005166 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000014736 | 1 retrocopy |
retro_etel_267 ,
|
Macropus eugenii | ENSMEUG00000010071 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012391 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000013140 | 1 retrocopy |