RetrogeneDB ID: | retro_etel_510 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_8458:78121..78545(-) | ||
Located in intron of: | ENSETEG00000009263 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANP32B | ||
Ensembl ID: | ENSETEG00000015514 | ||
Aliases: | None | ||
Description: | acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:HGNC Symbol;Acc:16677] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 58.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNFPKLPKLKKLELSDNRIFGGLDMLAEKLPNLTH |
VLDNC.SNDG.IEGLTAEFVN.E.L.LINVG.ISVS.FPKLPKLKKLEL.D.R.FGGLD..AE.LP.L.H | |
Retrocopy | VLDNCTSNDGAIEGLTAEFVNVESLHLINVGFISVSKFPKLPKLKKLELRDRRVFGGLDVRAEELPKLPH |
Parental | LNLSGNKLKDIST-LEPLK-KLECLKSLDLFNCEVT-NLNDYRESVFKLLPQ-LTYLDGYDLEDQE-APD |
LNLSG....D..T..EPL....EC.KSL.L..CE.T..L..YRE.V..LLPQ..TYL.GY.LED.E.APD | |
Retrocopy | LNLSGSERRDSRT<AEPLQ<NAECRKSLGLSGCEAT<RLEGYREGVLRLLPQ<VTYLGGYGLEDRE<APD |
Parental | SDAEVDGV |
..A.VD.V | |
Retrocopy | AEAGVDSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005149 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000020118 | 3 retrocopies | |
Equus caballus | ENSECAG00000012310 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015514 | 4 retrocopies | |
Homo sapiens | ENSG00000136938 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004844 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012242 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003261 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028333 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016941 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006091 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019430 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021172 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006569 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000804 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002189 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000010825 | 2 retrocopies |