RetrogeneDB ID: | retro_sara_549 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_232891:112770..113196(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANP32B | ||
Ensembl ID: | ENSSARG00000000804 | ||
Aliases: | None | ||
Description: | acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:HGNC Symbol;Acc:16677] |
Percent Identity: | 97.18 % |
Parental protein coverage: | 60.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VRELVLDNCKSKDGKIEGLTDEFVNLELLSLINVCLSSVSDLPKLPKLKKLELSENRVFGGLDMLAENLP |
VRELVLDNCKSKDGKIEGLTDEFVNL.LLSLINVCLSSVSDLPKLPKLKKLELSENRVFGGLDMLAENLP | |
Retrocopy | VRELVLDNCKSKDGKIEGLTDEFVNL*LLSLINVCLSSVSDLPKLPKLKKLELSENRVFGGLDMLAENLP |
Parental | NLTHLNLSGNKLKDISTLEPLKKLGCLKSLDLFNCEITNLNDYRESVFKLLPQLTYLDGYDREDREAPDS |
NLTHLNLSGNKLKDISTLEPLKKLGCLKSLDLFNCEITNLNDY.ESVFKLLPQLTYLDGYD.EDREAPD. | |
Retrocopy | NLTHLNLSGNKLKDISTLEPLKKLGCLKSLDLFNCEITNLNDYLESVFKLLPQLTYLDGYDGEDREAPDL |
Parental | DT |
DT | |
Retrocopy | DT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005149 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000020118 | 3 retrocopies | |
Equus caballus | ENSECAG00000012310 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015514 | 4 retrocopies | |
Homo sapiens | ENSG00000136938 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000004844 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012242 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003261 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028333 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016941 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006091 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019430 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021172 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000006569 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000804 | 1 retrocopy |
retro_sara_549 ,
|
Tupaia belangeri | ENSTBEG00000002189 | 8 retrocopies | |
Tursiops truncatus | ENSTTRG00000010825 | 2 retrocopies |