RetrogeneDB ID: | retro_etel_622 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_104260:1849..2285(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT21 | ||
Ensembl ID: | ENSETEG00000013634 | ||
Aliases: | None | ||
Description: | nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 68.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | REEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGEL-NPGEDEVEGLKRLMTEILGRQDGVL |
RE..DKIG.RRTVEG...V.EH..PHVLLLQLGTT.FKLPGGEL..P....VEG.KR..TEIL.R.DG.L | |
Retrocopy | REGVDKIGIRRTVEGGPVVYEHQRPHVLLLQLGTTSFKLPGGEL<YPDDE-VEGRKR*GTEILDRYDGCL |
Parental | QDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAP |
..WVI....G..W..NFEPPQ...IPA..TKP.E.KKLF.VQLQ.KALF.VP.NY.LVAAPL.EL.DNAP | |
Retrocopy | LHWVI----GKRWGTNFEPPQCLHIPAYTTKPEEQKKLFPVQLQGKALFTVPRNYQLVAAPLSELDDNAP |
Parental | GYGP-IISSLPQL |
.YGP...SSLP.L | |
Retrocopy | *YGP<VTSSLPIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012724 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000013634 | 1 retrocopy |
retro_etel_622 ,
|
Loxodonta africana | ENSLAFG00000028465 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019906 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003451 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017224 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000014583 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000009651 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029848 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000014602 | 4 retrocopies |