RetrogeneDB ID:

retro_etel_628

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_104636:4907..5202(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2C
Ensembl ID:ENSETEG00000012346
Aliases:None
Description:ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937]


Retrocopy-Parental alignment summary:






>retro_etel_628
ATGGCCTCCCAAAATCACGACCCAGCCTCAGCCAGTGTCGTAGCCGCCCAAAAAGGCGCCGAGCCCAGCGGGGGAGCAGC
CCAGGGGTTCCGTGGGCAAGAGGCTGCAACAGGAGCTGATGATCCTCATGATGTCTGGCGACAAAGGAATCTCTGCCTTC
CTGGAATCAGACAACCTTTTCAAGTGGATAGGGACCATCCACGGAGCAGCTGGTACGGTCTATGAAGACCTGAGGTATAA
GCTCTCCCTGGAGTTCCCCAGTGGCTGCCCTTACAATGCACCCACAGTGAAGTTC

ORF - retro_etel_628 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.83 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMASQNRDPAAASVVAARKGAEPSGGAA-RGSVGKXXXXXXXXXXMSDDKGISAFPESDNLFKWIGTIHGA
MASQN.DPA.ASVVAA.KGAEPSGGAA.RGSVGK..........MS.DKGISAF.ESDNLFKWIGTIHGA
RetrocopyMASQNHDPASASVVAAQKGAEPSGGAA>RGSVGKRLQQELMILMMSGDKGISAFLESDNLFKWIGTIHGA
ParentalAGTVYEDLRYKLSLEFPSGYPYNAPTVKF
AGTVYEDLRYKLSLEFPSG.PYNAPTVKF
RetrocopyAGTVYEDLRYKLSLEFPSGCPYNAPTVKF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_628 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000141022 retrocopies
Echinops telfairi ENSETEG00000012346 18 retrocopies
Loxodonta africana ENSLAFG000000031641 retrocopy
Macaca mulatta ENSMMUG000000210234 retrocopies
Monodelphis domestica ENSMODG000000136616 retrocopies
Mustela putorius furoENSMPUG000000176192 retrocopies
Otolemur garnettii ENSOGAG000000049893 retrocopies
Pan troglodytes ENSPTRG000000135641 retrocopy



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