RetrogeneDB ID: | retro_etel_666 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_137526:296..579(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000012369 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABARAP | ||
Ensembl ID: | ENSETEG00000004652 | ||
Aliases: | None | ||
Description: | GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067] |
Percent Identity: | 86.6 % |
Parental protein coverage: | 79.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | YPDRVPVI-VEKAPKARIGDLDKKK-YLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMG |
YPDRVPVI..EKAP.ARIGDLDKK..YLVP.DLTVGQFYF.IRKRIHLRAEDALFFFVNNVIPP..ATMG | |
Retrocopy | YPDRVPVI>LEKAPTARIGDLDKKR>YLVPTDLTVGQFYFFIRKRIHLRAEDALFFFVNNVIPPINATMG |
Parental | QLYQEHH-EEDFFLYISYSD-ESVYGV |
QLYQEHH.EEDFFL.ISYSD..SVYGV | |
Retrocopy | QLYQEHH>EEDFFLSISYSD>RSVYGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000012473 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004652 | 7 retrocopies |
retro_etel_1020, retro_etel_1078, retro_etel_1562, retro_etel_2068, retro_etel_493, retro_etel_666 , retro_etel_976,
|
Echinops telfairi | ENSETEG00000012407 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015189 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000744 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010545 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010473 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004388 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000017936 | 1 retrocopy | |
Drosophila melanogaster | FBgn0052672 | 1 retrocopy |