RetrogeneDB ID: | retro_etel_71 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1203:72751..73205(-) | ||
Located in intron of: | ENSETEG00000006901 | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006909 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME1 | ||
Ensembl ID: | ENSETEG00000005563 | ||
Aliases: | None | ||
Description: | NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:7849] |
Percent Identity: | 79.74 % |
Parental protein coverage: | 56.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TMANSERTFIAIKPDGVQRGLVGDIIKRFEQKGFRLVGMKLVQASEEHLKQHSIDLKDRPFFPGLVKDMN |
TMANSE.TF.AIKPDGVQ.GLVGDIIK.FEQKGF.LVGMKL.QASEEH.KQH..DLKD.PF.PGLVK.MN | |
Retrocopy | TMANSEHTFVAIKPDGVQCGLVGDIIKHFEQKGF*LVGMKLIQASEEHMKQHYVDLKDCPFLPGLVKYMN |
Parental | SGPIVAMVWEGLNVVKTGRVM-GETHPADSKP--TRGDFCIQVG-NIIHGSDSVKSAEKEISLWFKPEEL |
SGPIV.MVWEGLNVVKTG.VM.GET.PADSKP...RGDFCIQVG.NI.HGSD.VK..EKEIS.WFK.EEL | |
Retrocopy | SGPIVPMVWEGLNVVKTGQVMLGETNPADSKPGTIRGDFCIQVGRNITHGSDLVKGTEKEISFWFKLEEL |
Parental | VDYK-SCCYDWIY |
VD....C.YDWIY | |
Retrocopy | VDHN>CC-YDWIY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000023628 | 7 retrocopies | |
Cavia porcellus | ENSCPOG00000008413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005563 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000014875 | 1 retrocopy | |
Mus musculus | ENSMUSG00000091228 | 3 retrocopies |