RetrogeneDB ID: | retro_cfam_832 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:52204464..52204761(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NME1 | ||
Ensembl ID: | ENSCAFG00000023628 | ||
Aliases: | NME1, NM23-C1, NM23A | ||
Description: | Canis lupus familiaris non-metastatic cells 1, protein (NM23A) expressed in (NME1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024637] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 65.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DLKDRPFFAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV |
DLKD..F.A.LVKY.QS..V.AM.WEGLNV.KTG.VML..T.P..SKPGTI.GDFCIQV..NI.HG..SV | |
Retrocopy | DLKDHSFSAILVKYLQSESVGAMAWEGLNVLKTGQVMLRQTTPSYSKPGTIPGDFCIQVVKNITHGNNSV |
Parental | ESAEKEIGLWFQPEELVDYKSCAQNWIYE |
.SAEKEIGLWF.PEELVD.K.CAQNW.YE | |
Retrocopy | *SAEKEIGLWFRPEELVD*KNCAQNWFYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 94 .92 RPM |
SRP017611_brain | 0 .00 RPM | 88 .05 RPM |
SRP017611_kidney | 0 .13 RPM | 357 .59 RPM |
SRP017611_liver | 0 .00 RPM | 60 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004651 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019677 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000023628 | 7 retrocopies |
retro_cfam_117, retro_cfam_1645, retro_cfam_37, retro_cfam_676, retro_cfam_69, retro_cfam_832 , retro_cfam_96,
|
Cavia porcellus | ENSCPOG00000008413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005563 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016526 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000028492 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015559 | 5 retrocopies | |
Mus musculus | ENSMUSG00000091228 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007919 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022135 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009415 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002693 | 3 retrocopies |