RetrogeneDB ID: | retro_fcat_462 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:28010150..28010809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028982 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000012639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.95 % |
Parental protein coverage: | 65.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGV |
GQV.MACAIS.LGKSL.DELALVDVLEDKLKGEMM.LQHGSL..QTP.I.ADKDYSV..NSK.VVVTAGV | |
Retrocopy | GQVDMACAISVLGKSLVDELALVDVLEDKLKGEMMHLQHGSLCFQTPNIMADKDYSVISNSKTVVVTAGV |
Parental | RQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGC-NLDS |
.QQEGESRLNLVQRN.NVFK.II.Q.VKYSPD..II.VS.PVDILTYVT..LSGLPKH.VIG.GC.NL.S | |
Retrocopy | LQQEGESRLNLVQRNINVFKCIISQLVKYSPDSTIIEVSSPVDILTYVTRELSGLPKHHVIGNGCNNLNS |
Parental | ARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNV-AGVSLQELNPEMGTDNDSENWKEVHKMVVE |
ARF....AEK.GIHP.SC.GWI.GEHG.SSV..WSGV.V..GVSLQELNP..G....SE.WK...K.... | |
Retrocopy | ARFCCHVAEKVGIHPRSCRGWIWGEHGNSSVSGWSGVHV<GGVSLQELNPDLGGGSSSETWKKG*KYL*R |
Parental | SAYEVIKLKGY |
.....I...GY | |
Retrocopy | HQAKRIYQQGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 395 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 1456 .62 RPM |
SRP017611_liver | 0 .00 RPM | 7 .18 RPM |