RetrogeneDB ID: | retro_fcat_1043 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:73142390..73142875(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP4C | ||
Ensembl ID: | ENSFCAG00000014171 | ||
Aliases: | None | ||
Description: | protein phosphatase 4, catalytic subunit [Source:HGNC Symbol;Acc:9319] |
Percent Identity: | 64.46 % |
Parental protein coverage: | 53.09 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVP-ETNYLFMGDFVDRGF-YSVETFL |
L.AKA.EILV.E.NVQRV.S.VT.CGDIHGQ.YD.KELF.VGG..P.ETNYLFM.D.....F....ETFL | |
Retrocopy | LHAKAGEILVKETNVQRVESRVTICGDIHGQLYDFKELFSVGGKTP<ETNYLFMRDCMEHDF<LGIETFL |
Parental | LLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVWRYCTEI-FDYLSLSAIIDGKIFCVH |
LLL.L.V.Y.D.IT.I.GNH.S.QI.QVYGF..ECL..Y..VT.W.YC.E..FDY.SLSAII.G...... | |
Retrocopy | LLLVLNV*YNDHITKILGNH*SCQIPQVYGFFAECL*EYDLVTTWCYCPEL>FDYISLSAIINGNLLRAR |
Parental | GGLSPSIQTLDQIRTIDRKQEVPHDG |
..LSPSIQTLDQI...D.KQEVPH.G | |
Retrocopy | -VLSPSIQTLDQIQMTD*KQEVPHEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .05 RPM |
SRP017611_liver | 0 .00 RPM | 10 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015223 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017089 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000004266 | 1 retrocopy | |
Equus caballus | ENSECAG00000022179 | 1 retrocopy | |
Felis catus | ENSFCAG00000014171 | 1 retrocopy |
retro_fcat_1043 ,
|
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Felis catus | ENSFCAG00000029685 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000397 | 5 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000008136 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007984 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005532 | 1 retrocopy |