Parental gene:

H3F3A, ENSSSCG00000023971

Aliases:None
Description:Sus scrofa H3 histone, family 3A (H3F3A), mRNA. [Source:RefSeq mRNA;Acc:NM_213930]
Organism:Pig (Sus scrofa)
Coordinates:10:15839611..15846044(-)


>ENSSSCG00000023971
ATGGCTCGTACAAAGCAGACCGCCCGCAAATCGACTGGTGGTAAAGCACCGAGGAAGCAACTGGCTACAAAAGCCGCTCG
CAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACCGTGGCACTCCGTGAAATTAGAC
GTTATCAGAAGTCCACTGAACTTCTGATTCGCAAGCTTCCCTTCCAGCGTCTGGTGCGGGAAATTGCTCAGGACTTCAAA
ACAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGA
CACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAG
AACGTGCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 31 .32 RPM
SRP014902_testis 34 .51 RPM
SRP018288_heart 86 .05 RPM
SRP018288_kidney 112 .89 RPM
SRP018288_liver 57 .73 RPM
SRP018288_lung 184 .51 RPM
SRP018856_adipose 67 .83 RPM
SRP035408_brain 19 .12 RPM
SRP035408_liver 24 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024561 possible_ortholog 3 retrogenes
retro_btau_156, retro_btau_204, retro_btau_47,
Canis familiaris ENSCAFG00000004916 ortholog_one2many 2 retrogenes
retro_cfam_1117, retro_cfam_622,
Canis familiaris ENSCAFG00000016119 ortholog_one2many 4 retrogenes
retro_cfam_168, retro_cfam_1845, retro_cfam_650, retro_cfam_673,
Erinaceus europaeus ENSEEUG00000013796 ortholog_one2many 1 retrogene
retro_eeur_2,
Felis catus ENSFCAG00000003617 possible_ortholog 4 retrogenes
retro_fcat_1085, retro_fcat_1953, retro_fcat_592, retro_fcat_830,
Felis catus ENSFCAG00000030424 possible_ortholog 5 retrogenes
retro_fcat_1251, retro_fcat_1532, retro_fcat_1533, retro_fcat_2011, retro_fcat_674,
Gadus morhua ENSGMOG00000014306 possible_ortholog 1 retrogene
retro_gmor_9,
Macropus eugenii ENSMEUG00000004090 ortholog_one2one 5 retrogenes
retro_meug_1041, retro_meug_1065, retro_meug_1819, retro_meug_281, retro_meug_573,
Macaca mulatta ENSMMUG00000031483 ortholog_one2one 9 retrogenes
retro_mmul_108, retro_mmul_147, retro_mmul_201, retro_mmul_213, retro_mmul_215, retro_mmul_286, retro_mmul_337, retro_mmul_346, retro_mmul_7,
Nomascus leucogenys ENSNLEG00000001577 possible_ortholog 2 retrogenes
retro_nleu_25, retro_nleu_35,
Otolemur garnettii ENSOGAG00000024312 possible_ortholog 11 retrogenes
retro_ogar_1086, retro_ogar_1790, retro_ogar_1863, retro_ogar_2364, retro_ogar_2463, retro_ogar_2581, retro_ogar_2746, retro_ogar_3415, retro_ogar_478, retro_ogar_842, retro_ogar_955,
Otolemur garnettii ENSOGAG00000025933 possible_ortholog 14 retrogenes
retro_ogar_1285, retro_ogar_1364, retro_ogar_1449, retro_ogar_1575, retro_ogar_1576, retro_ogar_2200, retro_ogar_2316, retro_ogar_2449, retro_ogar_2634, retro_ogar_3235, retro_ogar_42, retro_ogar_733, retro_ogar_937, retro_ogar_952,
Oreochromis niloticus ENSONIG00000015805 ortholog_one2one 7 retrogenes
retro_onil_45, retro_onil_47, retro_onil_51, retro_onil_54, retro_onil_61, retro_onil_65, retro_onil_69,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Pteropus vampyrus ENSPVAG00000008459 possible_ortholog 2 retrogenes
retro_pvam_218, retro_pvam_52,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_31 97.79 100.00
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2. retro_sscr_712 94.16 100.00
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Download FASTA sequences of all ENSSSCG00000023971 retrocopies