RetrogeneDB ID: | retro_fcat_1451 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:68060030..68060345(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5J | ||
Ensembl ID: | ENSFCAG00000029970 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 [Source:HGNC Symbol;Acc:847] |
Percent Identity: | 76.64 % |
Parental protein coverage: | 97.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QRLFRVSSLMRSMVSVHLRRNIGVTAVAFNKELDPVQKLFVDKIREYKTKR-QASGGPVDTGPEYQQELE |
QRLFR.SS..R..VSVHLRRNIG..A.AF.KELDPVQKLF.DKIRE..TK..QASGG.VD.GPEYQQE.E | |
Retrocopy | QRLFRFSSVIRFTVSVHLRRNIGIIAAAFTKELDPVQKLFIDKIRE*RTKH<QASGGRVDIGPEYQQEPE |
Parental | RELFK-LKQMYGKADMNTFPNFNFEDPKFEVIDKPQS |
RE.FK.L.QMYGKADMNTFPNF.FEDPK.E.I.K.QS | |
Retrocopy | REFFK>LNQMYGKADMNTFPNFTFEDPKSEAIEKLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 142 .01 RPM |
SRP017611_liver | 0 .00 RPM | 46 .30 RPM |