RetrogeneDB ID: | retro_ocun_419 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 10:12911778..12912102(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026115 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5J | ||
Ensembl ID: | ENSOCUG00000006681 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 [Source:HGNC Symbol;Acc:847] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MILQKLFRFSSVVRSAVAVHLRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDAGPSYQQD |
MILQKLFRFSSVVRSAVAVHLRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDAGPSYQQD | |
Retrocopy | MILQKLFRFSSVVRSAVAVHLRRNIGVTAVAFNKELDPVQKLFVDKIREYKSKRQASGGPVDAGPSYQQD |
Parental | LEKELFKLKQMFGKADMNTFPTFKFEDPKFETIEKPQS |
LEKELFKLKQMFGKADMNTFPTFKFEDPKFETIEKPQS | |
Retrocopy | LEKELFKLKQMFGKADMNTFPTFKFEDPKFETIEKPQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 5 .19 RPM | 19 .59 RPM |
SRP017611_kidney | 0 .71 RPM | 54 .94 RPM |
SRP017611_liver | 2 .77 RPM | 7 .17 RPM |