RetrogeneDB ID: | retro_fcat_201 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:195155107..195155271(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COA5 | ||
Ensembl ID: | ENSFCAG00000004424 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase assembly factor 5 [Source:HGNC Symbol;Acc:33848] |
Percent Identity: | 75. % |
Parental protein coverage: | 63.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KEDLGACLLQSDCVLQEGKSPRQCLKEGNCK-ALKYSFFECKRSMLDARSRFRGRK |
.E.L..CLL.S.CVLQEGKS..QCLKEG..K.ALKYSF..CK.SMLDARSRFRGRK | |
Retrocopy | EENLAVCLLPSECVLQEGKSHQQCLKEGYSK<ALKYSFLACKISMLDARSRFRGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .04 RPM |
SRP017611_liver | 0 .00 RPM | 3 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007139 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009263 | 1 retrocopy | |
Equus caballus | ENSECAG00000004183 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013626 | 1 retrocopy | |
Felis catus | ENSFCAG00000004424 | 1 retrocopy |
retro_fcat_201 ,
|
Homo sapiens | ENSG00000183513 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006019 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013167 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001998 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002972 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000012085 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012267 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001578 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006275 | 1 retrocopy |