RetrogeneDB ID: | retro_fcat_247 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:110520114..110520405(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000031365 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.71 % |
Parental protein coverage: | 77.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LPYKITAEEMYDIFGKYGPIRQI-RVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNR-YLVVLYYN |
LPY....EE.YDIF.KY..I..I...G.TP.TRGTA.....D.FDA.N.CDHLSGF.V.NR..LVVLY.N | |
Retrocopy | LPYDMIGEETYDIFWKY*SIH*I<LTGDTPATRGTACMICKDFFDA*NVCDHLSGFSVYNR>NLVVLYCN |
Parental | ANRAFQKMDTKKKEEQLKLLKEKYGINTD |
ANRAFQK.DTKKKEEQLKLLKEKYGINTD | |
Retrocopy | ANRAFQKVDTKKKEEQLKLLKEKYGINTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .36 RPM |
SRP017611_liver | 0 .00 RPM | 33 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002786 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003407 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000689 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000007716 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007148 | 1 retrocopy | |
Equus caballus | ENSECAG00000015618 | 1 retrocopy | |
Felis catus | ENSFCAG00000031365 | 1 retrocopy |
retro_fcat_247 ,
|
Homo sapiens | ENSG00000115128 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001282 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013957 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000815 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004468 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012603 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011709 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011902 | 1 retrocopy |