RetrogeneDB ID: | retro_chof_351 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_8098:11902..12164(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000000101 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000000689 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.9 % |
Parental protein coverage: | 70.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDT-KKK |
.FGKYGPI.QIRVGNTPETRGTA.VVYEDIFD..NA.DHLSGF.VCNR.LVVLYYNANRAFQK.DT.K.. | |
Retrocopy | VFGKYGPICQIRVGNTPETRGTACVVYEDIFDVRNAYDHLSGFSVCNRCLVVLYYNANRAFQKTDT>KEE |
Parental | EEQLKLLKEKYGINTDPPK |
E..LKLLKEKY..NTD.PK | |
Retrocopy | EQ-LKLLKEKYSVNTDTPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002786 | 1 retrocopy | |
Bos taurus | ENSBTAG00000003407 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000689 | 3 retrocopies |
retro_chof_1217, retro_chof_2457, retro_chof_351 ,
|
Callithrix jacchus | ENSCJAG00000007716 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007148 | 1 retrocopy | |
Equus caballus | ENSECAG00000015618 | 1 retrocopy | |
Felis catus | ENSFCAG00000031365 | 1 retrocopy | |
Homo sapiens | ENSG00000115128 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002473 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001282 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013957 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000815 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004468 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012603 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011709 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011902 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012532 | 5 retrocopies |