RetrogeneDB ID: | retro_fcat_310 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:14290112..14290454(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MCTS1 | ||
Ensembl ID: | ENSFCAG00000008448 | ||
Aliases: | None | ||
Description: | malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357] |
Percent Identity: | 79.82 % |
Parental protein coverage: | 62.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LLFFRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAQLYPAAVDTVVAIMAE |
LLFFRQREGPFYPTLRLLHKYPF.L..QQVDKGAI.FVLS.ANIMCPGLTSPGA.LYP.AV.T.VAIMAE | |
Retrocopy | LLFFRQREGPFYPTLRLLHKYPFSLVPQQVDKGAITFVLSRANIMCPGLTSPGAKLYPVAVRTIVAIMAE |
Parental | GKQHALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK |
G.QH.LCVG.MK..AED.E.V.K.I.I.NIHYL.DGLWHM..YK | |
Retrocopy | GNQHFLCVGIMKIFAEDTE*VKKAISIKNIHYLSDGLWHMRIYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .89 RPM |
SRP017611_liver | 0 .00 RPM | 2 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034992 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018545 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015462 | 1 retrocopy | |
Felis catus | ENSFCAG00000008448 | 2 retrocopies |
retro_fcat_1009, retro_fcat_310 ,
|
Myotis lucifugus | ENSMLUG00000015101 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001407 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000355 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014315 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020687 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011496 | 2 retrocopies |