RetrogeneDB ID: | retro_btau_116 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:44229782..44230328(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000017191 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MCTS1 | ||
Ensembl ID: | ENSBTAG00000034992 | ||
Aliases: | None | ||
Description: | Malignant T-cell-amplified sequence 1 [Source:UniProtKB/Swiss-Prot;Acc:Q2KIE4] |
Percent Identity: | 96.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFKKFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLF |
MFKKFDEKENVSNCIQLKTSVIKGIKNQL.EQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLF | |
Retrocopy | MFKKFDEKENVSNCIQLKTSVIKGIKNQLMEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLF |
Parental | FRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQ |
FRQREGPFYPTLRLLHKYPFILP.QQVDKGAIKFVLSGANIMCPGLTSPGA.L.PAAVDT.VAIMAEGKQ | |
Retrocopy | FRQREGPFYPTLRLLHKYPFILPRQQVDKGAIKFVLSGANIMCPGLTSPGARLFPAAVDTVVAIMAEGKQ |
Parental | HALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK |
HALCVGVMKMSA..IEKVNKGIGIENIHYLNDGLWHMKTYK | |
Retrocopy | HALCVGVMKMSADEIEKVNKGIGIENIHYLNDGLWHMKTYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 9 .52 RPM | 23 .58 RPM |
ERP005899_muscle | 33 .79 RPM | 13 .88 RPM |
SRP017611_brain | 20 .78 RPM | 12 .33 RPM |
SRP017611_kidney | 29 .16 RPM | 8 .36 RPM |
SRP017611_liver | 18 .88 RPM | 11 .93 RPM |
SRP030211_testis | 11 .40 RPM | 1 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_94 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034992 | 1 retrocopy |
retro_btau_116 ,
|
Canis familiaris | ENSCAFG00000018545 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005502 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015462 | 1 retrocopy | |
Felis catus | ENSFCAG00000008448 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014328 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009043 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010354 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001407 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000355 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015021 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014315 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020687 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011496 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000001801 | 1 retrocopy |