RetrogeneDB ID: | retro_fcat_375 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:38738500..38739006(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YRDC | ||
Ensembl ID: | ENSFCAG00000011018 | ||
Aliases: | None | ||
Description: | yrdC domain containing (E. coli) [Source:HGNC Symbol;Acc:28905] |
Percent Identity: | 63.22 % |
Parental protein coverage: | 77.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LKLSGRTSSDPSFLDGSVSPLFSRYCHVRVPEG-LLKDLLPGPVTLVLERSEELNKDLNPFTRLVGIRIP |
LK........P..L.G.V.....R.CHV....G.LLKDLL..PVTLVLE.S.E..KDLNPFT.LVG...P | |
Retrocopy | LKGCSKAKLPPVYL-GHVADVY-RDCHVEHIQG>LLKDLLSEPVTLVLESSQEVSKDLNPFTPLVGTWTP |
Parental | D-HAFIQDLAQVFG-GPLALTSANLSSQASSLNVEEFQDLWPQLSLIIDGGPIGDGQSSEYRLGSTVVDL |
..H.F.QDLA.VF....LALTS.NL.S.ASS.NV.EF..LWPQ....IDGGPIGDGQS.EY.LGSTVVDL | |
Retrocopy | I<HGFMQDLA*VFE<ATLALTSTNLDS*ASSPNVKEFLYLWPQSLPVIDGGPIGDGQSPEYCLGSTVVDL |
Parental | SVPGKFGIIRPGCALERTTAILQQKYGLLPSHGS |
SV.GKFGII.PGCALE..T.IL.QKYGL.PS..S | |
Retrocopy | SVLGKFGIIHPGCALESITSILPQKYGLFPSQRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .46 RPM |
SRP017611_liver | 0 .00 RPM | 2 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001173 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009111 | 2 retrocopies | |
Equus caballus | ENSECAG00000022522 | 1 retrocopy | |
Felis catus | ENSFCAG00000011018 | 1 retrocopy |
retro_fcat_375 ,
|
Homo sapiens | ENSG00000196449 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005068 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011953 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000955 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005372 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011665 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030474 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001523 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000557 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000008863 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005555 | 3 retrocopies |