RetrogeneDB ID: | retro_tsyr_1108 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_307811:740..1174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YRDC | ||
Ensembl ID: | ENSTSYG00000005555 | ||
Aliases: | None | ||
Description: | yrdC domain containing (E. coli) [Source:HGNC Symbol;Acc:28905] |
Percent Identity: | 72.67 % |
Parental protein coverage: | 63.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | YCHVRVPEELLKDLLPGPVTLVMERSEELNKDLNPFTLLVGIRIPEHAFMQDLTQVFGGPLA-LTSANLS |
Y.HV.VP.ELLK.LLP.PV.LVMER.E.L.KDLNPFTLLVGI.IP.HA.M.DL...FGGPLA..TSANLS | |
Retrocopy | YNHV*VPKELLKGLLPRPVILVMERLEDLSKDLNPFTLLVGIWIPDHASM*DLAPMFGGPLA<STSANLS |
Parental | SQGSSLNVEEFQDLWPHLSLVIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCALESTTAILQQKY |
.QGSSLNVEEF.DLWPHLSLVIDGGP.G........LG..V.D.SVPGK..II...C.LESTTAILQQKY | |
Retrocopy | FQGSSLNVEEF*DLWPHLSLVIDGGPNGMAKA----LGVAVADASVPGKLVIIHSVCGLESTTAILQQKY |
Parental | GLLPSRASCS |
.LLPS.ASCS | |
Retrocopy | RLLPSHASCS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001173 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009111 | 2 retrocopies | |
Equus caballus | ENSECAG00000022522 | 1 retrocopy | |
Felis catus | ENSFCAG00000011018 | 1 retrocopy | |
Homo sapiens | ENSG00000196449 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005068 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011953 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000955 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005372 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011665 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030474 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001523 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000557 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000008863 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005555 | 3 retrocopies |
retro_tsyr_1108 , retro_tsyr_1420, retro_tsyr_874,
|