RetrogeneDB ID: | retro_fcat_376 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:44295025..44295504(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000030268 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.37 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGS |
MEDS.D.DMSPLR.QNYLFGCELKADKDYHFKVDNDEN.H.LSLRT.SLGAGAKD.LHIVEAEAM.YEGS | |
Retrocopy | MEDSVDTDMSPLRLQNYLFGCELKADKDYHFKVDNDENKH*LSLRTISLGAGAKDKLHIVEAEAMSYEGS |
Parental | PIKVTLATLK-MSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSIS |
PIKVTLATLK.MS.Q.TVSL.GF.ITPPVV..LKCGSGPVHISGQ...AVE.DAESED..EEDVKLLSI. | |
Retrocopy | PIKVTLATLK<MSLQLTVSLAGFKITPPVVS*LKCGSGPVHISGQCFIAVEKDAESEDQKEEDVKLLSIC |
Parental | GKRSAPGSGSKVPQKKVKLAA |
GK.S..G.GS..PQKKVK..A | |
Retrocopy | GKPSVSGCGSNIPQKKVKFGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 111 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 290 .52 RPM |
SRP017611_liver | 0 .00 RPM | 114 .43 RPM |