RetrogeneDB ID: | retro_hsap_3636 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:100498666..100499141(-) | ||
Located in intron of: | ENSG00000229315 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000219257 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NPM1 | ||
Ensembl ID: | ENSG00000181163 | ||
Aliases: | NPM1, B23, NPM | ||
Description: | nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 61.39 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEDSMDMDMSPLRPQNYLF-GCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEG |
MED.MD.DM..LRPQNYLF..CELKA.KD.HFKVDNDENEHQLS.RTVSLGAGAKD.LHIVEAE.MNYEG | |
Retrocopy | MEDFMDIDMT-LRPQNYLF>NCELKANKDDHFKVDNDENEHQLS*RTVSLGAGAKDKLHIVEAETMNYEG |
Parental | SPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSIS |
.P.KVTLATLKMSVQPTVSLGGFEIT.PVVL.LK..SG.VHI.GQH...VEEDAESEDEEEEDVKLLS.. | |
Retrocopy | NPTKVTLATLKMSVQPTVSLGGFEITLPVVL*LKRCSGSVHITGQH*LVVEEDAESEDEEEEDVKLLSVP |
Parental | GKRSAPGGGSKVPQKKVKLA |
G.RSAPGGGSK.PQ.KVKLA | |
Retrocopy | GRRSAPGGGSKLPQRKVKLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 332 .62 RPM |
bodymap2_adrenal | 0 .00 RPM | 422 .00 RPM |
bodymap2_brain | 0 .00 RPM | 165 .16 RPM |
bodymap2_breast | 0 .00 RPM | 239 .26 RPM |
bodymap2_colon | 0 .00 RPM | 676 .89 RPM |
bodymap2_heart | 0 .00 RPM | 159 .13 RPM |
bodymap2_kidney | 0 .00 RPM | 255 .78 RPM |
bodymap2_liver | 0 .00 RPM | 151 .05 RPM |
bodymap2_lung | 0 .00 RPM | 383 .42 RPM |
bodymap2_lymph_node | 0 .00 RPM | 324 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 913 .07 RPM |
bodymap2_prostate | 0 .00 RPM | 560 .29 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 231 .70 RPM |
bodymap2_testis | 0 .26 RPM | 446 .48 RPM |
bodymap2_thyroid | 0 .00 RPM | 478 .22 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 368 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2453 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |