RetrogeneDB ID: | retro_fcat_409 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:157428445..157428743(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR3K | ||
Ensembl ID: | ENSFCAG00000009110 | ||
Aliases: | None | ||
Description: | polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Source:HGNC Symbol;Acc:14121] |
Percent Identity: | 66.99 % |
Parental protein coverage: | 93.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FCPGCGNGLIVEE-GQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDV-LGGAAAWENVDSTAESCPK |
FCP..GNG.I..E.GQ....FAC.TCPY.H.ITRKV.NR..PKLK.V.D....GAAAWENVDS.AE..P. | |
Retrocopy | FCPSRGNGPIMQE<GQHRYQFACDTCPYMH-ITRKVKNRRNPKLKSVEDM<ACGAAAWENVDSPAELHPN |
Parental | CEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH |
CEHP.AYF.QLQT.SADE..TTFYKC..A.CGH | |
Retrocopy | CEHPCAYFVQLQTHSADELVTTFYKCSDARCGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .08 RPM |
SRP017611_liver | 0 .00 RPM | 3 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019715 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011568 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009989 | 2 retrocopies | |
Felis catus | ENSFCAG00000009110 | 2 retrocopies |
retro_fcat_1978, retro_fcat_409 ,
|
Homo sapiens | ENSG00000161980 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015593 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002526 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007525 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000530 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007970 | 1 retrocopy |