RetrogeneDB ID: | retro_fcat_516 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:22298940..22299434(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK4 | ||
Ensembl ID: | ENSFCAG00000029663 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 4 [Source:HGNC Symbol;Acc:1773] |
Percent Identity: | 81.55 % |
Parental protein coverage: | 55.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MATPRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGASGGLPISTVREVALLRRLEAFEHPN |
MATP.YEPVAEIGVG.YG...KA..PHSGHF.ALKSVRVPNG..A.GGLPISTV.EVALLR.LEAFEHP. | |
Retrocopy | MATPQYEPVAEIGVGTYG--HKAHGPHSGHFMALKSVRVPNGRVAGGGLPISTVHEVALLRQLEAFEHPS |
Parental | VVRLMDVCATARTDRETKVTLVFEHVDQDLRTYLDKAPPPGLPVETIKDLMRQF-LRGLDFLHANCIVHR |
VV.LMD.CA.A.T..ETKVTLVFEH.DQD.R.YLDKAPPPGLPVETIK..MRQF.LRGLDFLHANCI.H. | |
Retrocopy | VVHLMDLCAMAQTA*ETKVTLVFEHIDQDQRLYLDKAPPPGLPVETIKEMMRQF<LRGLDFLHANCIIH* |
Parental | DLKPENILVTSGGTVKLADFGLARIYSY |
DLKPE.ILVT.GGTVKLADFG.ARIYSY | |
Retrocopy | DLKPESILVTNGGTVKLADFGPARIYSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .38 RPM |
SRP017611_liver | 0 .00 RPM | 17 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007160 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000280 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006697 | 3 retrocopies | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Felis catus | ENSFCAG00000029663 | 1 retrocopy |
retro_fcat_516 ,
|
Gorilla gorilla | ENSGGOG00000001404 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014609 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023651 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023694 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006728 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017205 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005147 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011937 | 3 retrocopies |