RetrogeneDB ID: | retro_ggor_275 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:108183874..108184335(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK4 | ||
Ensembl ID: | ENSGGOG00000001404 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.19 % |
Parental protein coverage: | 50.83 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | AETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADF-GLARIYSYQMALTPVVVTLWYRA |
AE.IKDLM..F.RGLDFLHA.CIVH..L.PENILVTS.GTVKLAD..GLA.IYSYQMA.TPVVVTL.Y.A | |
Retrocopy | AEAIKDLMHKFRRGLDFLHAHCIVH*YLRPENILVTSAGTVKLADL<GLASIYSYQMAFTPVVVTLLYCA |
Parental | PEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPR |
.EVLLQST.AT.VDM..VGC.FAEMF..K.LFCG.S.A..LGKIF.LIGLP..DDWP.DVSLP...F..R | |
Retrocopy | HEVLLQSTQATSVDM*RVGCVFAEMFPQKSLFCGSSKAN*LGKIFNLIGLPL*DDWP*DVSLPHRTFLHR |
Parental | GPRPVQSVVPEMEES |
GPRPVQ.VVPEME.. | |
Retrocopy | GPRPVQLVVPEMEHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 20 .38 RPM |
SRP007412_cerebellum | 0 .00 RPM | 23 .72 RPM |
SRP007412_heart | 0 .00 RPM | 22 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .20 RPM |
SRP007412_liver | 0 .00 RPM | 34 .11 RPM |
SRP007412_testis | 0 .00 RPM | 31 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_180 |
Macaca mulatta | retro_mmul_401 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007160 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000280 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006697 | 3 retrocopies | |
Felis catus | ENSFCAG00000029663 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001404 | 1 retrocopy |
retro_ggor_275 ,
|
Gorilla gorilla | ENSGGOG00000016879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014609 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023651 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023694 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006728 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017205 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005147 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011937 | 3 retrocopies |