RetrogeneDB ID: | retro_fcat_576 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:142882811..142883199(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRTCAP2 | ||
Ensembl ID: | ENSFCAG00000025085 | ||
Aliases: | None | ||
Description: | keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:28942] |
Percent Identity: | 78.03 % |
Parental protein coverage: | 95.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ASMMLSSLLSLLLFAGMQMY-SRQLASTEWLTIQG-GLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPE |
AS..LSSL..LLLF..MQM..S.QL...E.L.I.G.GLLG.GLFVFSLTAFNNLENLVFGKGFQAKIF.E | |
Retrocopy | ASLALSSLMYLLLFTRMQMV<SHQLVCSE*LAIHG<GLLGFGLFVFSLTAFNNLENLVFGKGFQAKIFHE |
Parental | ILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQATAPVLAPAKVTGKGKKRN |
ILLCL.LALFASGL.HRVC.TT.F.FSMVGL.YINK.SSTLYQA..P.L.PAKVTGKGKKRN | |
Retrocopy | ILLCLPLALFASGLTHRVCLTT*FTFSMVGLCYINKASSTLYQAAVPGLPPAKVTGKGKKRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 14 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .09 RPM |
SRP017611_liver | 0 .00 RPM | 17 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011336 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017055 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009017 | 1 retrocopy | |
Felis catus | ENSFCAG00000025085 | 3 retrocopies |
retro_fcat_1496, retro_fcat_477, retro_fcat_576 ,
|
Homo sapiens | ENSG00000163463 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009303 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012180 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005647 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011864 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000347 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030271 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000756 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001410 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020542 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008829 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013228 | 2 retrocopies |