Parental gene:

KRTCAP2, ENSMMUG00000012180

Aliases:None
Description:keratinocyte associated protein 2 [Source:HGNC Symbol;Acc:28942]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:133720986..133725829(-)


>ENSMMUG00000012180
ATGCGCATAGCTAACCGCACCCGCCTCAGCTTCCCTTTCTTGGCCAGAGGCGCCGGTTGGACTCACGGGAGGGGCATGAT
GGTGGTAGGTACAGGCACCTCGCTGGCGCTTTCCTCCCTCCTGTCCCTGCTGCTCTTCGCTGGGATGCAGATGTACAGCC
GTCAGCTGGCCTCCACCGAGTGGCTCACCATCCAGGGCGGCCTGCTTGGCTCGGGTCTCTTCGTGTTCTCGCTCACTGCC
TTCAATAATCTGGAGAATCTTGTTTTTGGCAAAGGATTCCAAGCAAAGATCTTCCCTGAGATTCTCCTGTGCCTCCTGTT
GGCTCTCTTTGCATCTGGTCTCATCCACCGAGTCTGTGTCACCACCTGCTTCATCTTCTCCATGGTTGGTCTGTACTACA
TCAACAAGATCTCCTCCACCCTGTACCAGGCAGCAGCTCCAGTCCTCACACCAGCCAAGGTCACAGGCAAGAGCAAGAAG
AGAAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .74 RPM
SRP007412_brain 12 .66 RPM
SRP007412_cerebellum 13 .95 RPM
SRP007412_heart 22 .08 RPM
SRP007412_kidney 37 .91 RPM
SRP007412_liver 55 .77 RPM
SRP007412_testis 84 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011336 ortholog_one2one 1 retrogene
retro_amel_1789,
Canis familiaris ENSCAFG00000017055 ortholog_one2one 1 retrogene
retro_cfam_1487,
Callithrix jacchus ENSCJAG00000009017 ortholog_one2one 1 retrogene
retro_cjac_1289,
Felis catus ENSFCAG00000025085 ortholog_one2one 3 retrogenes
retro_fcat_1496, retro_fcat_477, retro_fcat_576,
Homo sapiens ENSG00000163463 ortholog_one2one 1 retrogene
retro_hsap_2100,
Gorilla gorilla ENSGGOG00000009303 ortholog_one2one 1 retrogene
retro_ggor_1635,
Mustela putorius furo ENSMPUG00000005647 ortholog_one2one 1 retrogene
retro_mputfur_1653,
Nomascus leucogenys ENSNLEG00000011864 ortholog_one2one 1 retrogene
retro_nleu_1306,
Oryctolagus cuniculus ENSOCUG00000000347 ortholog_one2many 1 retrogene
retro_ocun_157,
Otolemur garnettii ENSOGAG00000030271 ortholog_one2one 1 retrogene
retro_ogar_1306,
Pongo abelii ENSPPYG00000000756 ortholog_one2one 1 retrogene
retro_pabe_1999,
Pan troglodytes ENSPTRG00000001410 ortholog_one2one 1 retrogene
retro_ptro_1541,
Rattus norvegicus ENSRNOG00000020542 ortholog_one2one 1 retrogene
retro_rnor_2128,
Ictidomys tridecemlineatus ENSSTOG00000008829 ortholog_one2many 1 retrogene
retro_itri_1127,
Tarsius syrichta ENSTSYG00000013228 ortholog_one2one 2 retrogenes
retro_tsyr_1096, retro_tsyr_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_745 84.52 50.62
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2. retro_mmul_987 85.33 92.59
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Download FASTA sequences of all ENSMMUG00000012180 retrocopies