RetrogeneDB ID: | retro_fcat_804 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:137361281..137361920(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023771 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC2 | ||
Ensembl ID: | ENSFCAG00000026943 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672] |
Percent Identity: | 59.17 % |
Parental protein coverage: | 74.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLT |
.C..P.Y.DLGKAA.D.FNKG.GFG.VK....TKSC.GVEFSTSG....DT.K..G.LETKYK.C.YGL. | |
Retrocopy | ICNTPTYGDLGKAAKDDFNKGYGFGSVKVRLRTKSCRGVEFSTSGHAYADTQKASGNLETKYKVCSYGLA |
Parental | FTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHG |
FT.KWN.D.TLGTEIA.......G.K.T.DT.F.PN.GKKSGK.K.SYK..C..LG..VD.DF.GP.I.G | |
Retrocopy | FTQKWNIDDTLGTEIASQNKLAEGSKRTLDTVFAPNPGKKSGKLKASYKWDCFSLGGNVDADFSGPTIFG |
Parental | SAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAW |
...FG..GWLAG.Q..FD.A.SKL..N..A.GY...DFQLH..V.DG.EFGGS.YQ.V.....TS...AW | |
Retrocopy | ---FG--GWLAGSQTSFDTARSKLPQNGVALGYTAADFQLHMHVSDGPEFGGSVYQEVNGKTGTSISVAW |
Parental | TSGTNCTR |
..G.N.TR | |
Retrocopy | MAGSNNTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 88 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .41 RPM |
SRP017611_liver | 0 .00 RPM | 51 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012975 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015398 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001145 | 1 retrocopy | |
Felis catus | ENSFCAG00000008421 | 1 retrocopy | |
Felis catus | ENSFCAG00000010075 | 2 retrocopies | |
Felis catus | ENSFCAG00000026943 | 3 retrocopies |
retro_fcat_1385, retro_fcat_804 , retro_fcat_815,
|
Homo sapiens | ENSG00000165637 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005861 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000012995 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007500 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003268 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021771 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013505 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012048 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001946 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000004764 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008068 | 1 retrocopy |