RetrogeneDB ID:

retro_fcat_815

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:16259050..16259557(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VDAC2
Ensembl ID:ENSFCAG00000026943
Aliases:None
Description:voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672]


Retrocopy-Parental alignment summary:






>retro_fcat_815
AAGTCTTCTTACAAGAGGGAGTGTATAAACCTCGGTTGTGATGTTGACTTTGATTTTGCTGGACCTGCAATCCATGGTTC
AGCTGTCTTTGGTTATGAGGGCTGGCTTGCTGGGTACCAGATGACCTTTGACAGTGCCAAATCAAAGCTGACAAGAAACA
ACTTTGCGGTGGGCTACAGGACTGGGGATTTCCAGCTACACACTAATGTCAATGATGGGACAGAATTTGGAGGTTCAATT
TATCAGAAAGTATGTGAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGATACCAACTGCACTCGCTTTGGCAT
TGCAGCCAAATATCAGTTGGACCCCACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGTTTAATTGGAGTGGGCTATA
CTCAGACTCTGAGGCCTGGTGTCAAGCTTACACTGTCTGCTCTGGTAGATGGGAAGAGCATTAATGCTGGAGGCCACAAA
CTTGGGCTTGCCCTGGAGTTGGAGGCT

ORF - retro_fcat_815 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.41 %
Parental protein coverage: 57.48 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNV
KSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNV
RetrocopyKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNV
ParentalNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPG
NDGTEFGGSIYQKVCEDLDTSVNLAWTS.TNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPG
RetrocopyNDGTEFGGSIYQKVCEDLDTSVNLAWTSDTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPG
ParentalVKLTLSALVDGKSINAGGHKLGLALELEA
VKLTLSALVDGKSINAGGHKLGLALELEA
RetrocopyVKLTLSALVDGKSINAGGHKLGLALELEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 1 .03 RPM 88 .15 RPM
SRP017611_kidney 0 .82 RPM 128 .41 RPM
SRP017611_liver 0 .10 RPM 51 .35 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_815 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_815 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000129752 retrocopies
Canis familiaris ENSCAFG000000153981 retrocopy
Callithrix jacchus ENSCJAG000000011451 retrocopy
Felis catus ENSFCAG000000084211 retrocopy
Felis catus ENSFCAG000000100752 retrocopies
Felis catus ENSFCAG00000026943 3 retrocopies
retro_fcat_1385, retro_fcat_804, retro_fcat_815 ,
Homo sapiens ENSG000001656371 retrocopy
Gorilla gorilla ENSGGOG000000058615 retrocopies
Macropus eugenii ENSMEUG000000129951 retrocopy
Myotis lucifugus ENSMLUG000000075002 retrocopies
Mustela putorius furoENSMPUG000000032681 retrocopy
Mus musculus ENSMUSG000000217711 retrocopy
Otolemur garnettii ENSOGAG000000300391 retrocopy
Rattus norvegicus ENSRNOG000000135051 retrocopy
Sarcophilus harrisii ENSSHAG000000120481 retrocopy
Tupaia belangeri ENSTBEG000000019464 retrocopies
Tarsius syrichta ENSTSYG000000047641 retrocopy
Vicugna pacos ENSVPAG000000080681 retrocopy



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