Parental gene:

VDAC2, ENSBTAG00000012975

Aliases:None
Description:Voltage-dependent anion-selective channel protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P68002]
Organism:Cow (Bos taurus)
Coordinates:28:31154551..31168822(+)


>ENSBTAG00000012975
ATGGCGACCTACGGACAGAACTGCGCGCGGCCAATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGA
TATATTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCGTGCAGCGGCGTGGAATTCTCAA
CATCTGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATATAAATGGTGTGAGTATGGTCTG
ACTTTCACAGAAAAGTGGAACACTGATAACACTCTGGGAACAGAAATCGCTATTGAAGACCAGATTTGCCAAGGTTTGAA
ACTGACATTTGATACCACCTTTTCGCCAAACACAGGAAAGAAAAGTGGTAAAATCAAGTCTTCTTACAAGAGGGAATGTA
TAAACCTCGGTTGTGATGTTGACTTTGATTTTGCTGGGCCTGCAATCCATGGTTCGGCTGTCTTCGGTTATGAGGGCTGG
CTTGCTGGGTACCAGATGACCTTTGACAGTGCCAAATCAAAGCTGACAAGGAATAACTTTGCAGTGGGCTACAGGACTGG
GGACTTCCAGCTACACACTAATGTCAATGATGGTACAGAATTTGGAGGATCAATTTATCAGAAAGTATGTGAAGATCTTG
ACACTTCAGTAAACCTTGCTTGGACATCAGGAACCAACTGCACTCGCTTTGGAATTGCAGCTAAATATCAACTGGATCCC
ACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGTTTAATTGGAGTGGGCTATACTCAGACTCTGAGGCCTGGTGTGAA
GCTTACACTGTCTGCCCTGGTAGACGGGAAGAGCATTAATGCTGGAGGCCACAAACTTGGGCTTGCCCTGGAATTGGAGG
CTTAA

Library Parental gene expression (RPM)
SRP017611_brain 75 .46 RPM
SRP017611_kidney 176 .04 RPM
SRP017611_liver 26 .05 RPM
ERP005899_muscle 144 .01 RPM
ERP005899_liver 53 .64 RPM
SRP030211_testis 210 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014068 within_species_paralog 4 retrogenes
retro_btau_1537, retro_btau_1607, retro_btau_365, retro_btau_685,
Canis familiaris ENSCAFG00000015398 ortholog_one2one 1 retrogene
retro_cfam_376,
Callithrix jacchus ENSCJAG00000001145 ortholog_one2one 1 retrogene
retro_cjac_2385,
Felis catus ENSFCAG00000026943 ortholog_one2one 3 retrogenes
retro_fcat_1385, retro_fcat_804, retro_fcat_815,
Homo sapiens ENSG00000165637 ortholog_one2one 1 retrogene
retro_hsap_2114,
Gorilla gorilla ENSGGOG00000005861 ortholog_one2one 5 retrogenes
retro_ggor_1677, retro_ggor_1949, retro_ggor_2934, retro_ggor_3036, retro_ggor_425,
Macropus eugenii ENSMEUG00000012995 possible_ortholog 1 retrogene
retro_meug_30,
Myotis lucifugus ENSMLUG00000007500 ortholog_one2one 2 retrogenes
retro_mluc_1710, retro_mluc_2252,
Mustela putorius furo ENSMPUG00000003268 ortholog_one2one 1 retrogene
retro_mputfur_354,
Mus musculus ENSMUSG00000021771 ortholog_one2one 1 retrogene
retro_mmus_2667,
Otolemur garnettii ENSOGAG00000030039 ortholog_one2one 1 retrogene
retro_ogar_2116,
Rattus norvegicus ENSRNOG00000013505 ortholog_one2many 1 retrogene
retro_rnor_2652,
Sarcophilus harrisii ENSSHAG00000012048 ortholog_one2one 1 retrogene
retro_shar_325,
Tupaia belangeri ENSTBEG00000001946 possible_ortholog 4 retrogenes
retro_tbel_1504, retro_tbel_1541, retro_tbel_1885, retro_tbel_4597,
Tarsius syrichta ENSTSYG00000004764 possible_ortholog 1 retrogene
retro_tsyr_14,
Vicugna pacos ENSVPAG00000008068 possible_ortholog 1 retrogene
retro_vpac_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1252 63.98 53.40
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2. retro_btau_1389 97.96 100.00
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Download FASTA sequences of all ENSBTAG00000012975 retrocopies